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The map label for this gene is yfdE [H]

Identifier: 197105989

GI number: 197105989

Start: 2902184

End: 2903428

Strand: Reverse

Name: yfdE [H]

Synonym: PHZ_c2528

Alternate gene names: 197105989

Gene position: 2903428-2902184 (Counterclockwise)

Preceding gene: 197105990

Following gene: 197105988

Centisome position: 72.65

GC content: 72.53

Gene sequence:

>1245_bases
ATGCCCGCGCCGTTGTCGAACGTACGTGTGCTGGAGCTCGGTCGCGTCTTCGCCGCGCCCTGGGCGGGCCAGCTGCTGGC
CGACCTCGGCGCCGAGGTGATCAAGGTCGAGGCGCTGGACGGCGATCCGATGCGGCAGATGGGGCTTGGCGTGGTCCGCG
ACGCGGAAGGCCGCGAGACCTCCGACCGCTCGGTGTTCGTCGCCGTGAACCGCAACAAGAAGTCGATCGCCGTCGACCTG
GCCGCAGAGGGCGGCGCCGAGCTCGTCCGCCGGCTGGCGGCCAGCTGCGACGTGTTCATCGAGAACTACAAGGTCGGGGA
CCTGGCGCGCCGCGGACTCGACTACGAGGCCATCCGCGCCGTCCGGCCGGACGTCATCTACCTGTCCGTCACGGGGTACG
GGCAGACCGGCCCCTATCGGGAGCGGCCGGGCATGGACAACATCGTCCAGGGGCTGACCGGCTACATGAGCATGACGGGC
CGACCGGGGGATCCGCCGCAGGCCAGCCCCGTCTCGATCATGGACTTCTCCGCCGGCATGCACGGGGCCCTGGCGGTGGT
GGCGGCGCTCTACGCCCGCTCCAGCGCCAACGCCGGCGGCCAGCACATCGACCTCGCGCTGCTCGACTCCGGGCTGGCTC
TCGTCGGCTACAAGATGGTGGCGACCCTGCTGTCGGGCGAAGAGCCGCCGCGCGGCGTACGGACCCGCGGCTACATCCCG
GGCGGGGCCTTCGAGACCGCAGACGGCTGGTTTCAGATGACCATAGGCGCGGACTCCGACTGGGCCCGTTTCTGCCGCGC
GACCGAGCGGCCGGATCTGGCGGCCGACCCGCGCTTCGCCGACCGGTGGCTCCGAACGGATAACCAGGAAGCCCTGCTGG
CCGACGTGGAGGCGATGTTCCGCACGCGCCCGCGGGCGCACTGGCTGAAGGTGCTGAACGAGGCGGGCCTGATGGCCGGC
GCGGTGCTGACGCTCACCGAAGCGGCTGAGGACCCCCAGGTGCGCGCGCGCGACTCGGTCCTGTCGATCCGCCACGCGCT
GGGCGGCGAACTGCCGGTCGTGCGCAATCCCATCAGGATGACGGGCACGCCGCTGTGCGAGCCCCAGTCGCCGCCGCTGC
TCGGGCAGGACGCGGACGAGGTGCTGGGCGAGCTGCTCGGGCTGGGACCGTCGGAAGTCGAGGCGCTCCGCGGCAAGGGC
GTCCTCGGGGCGGCGCCGGCCCGTGGGGCCGGCGAGACCGGCTGA

Upstream 100 bases:

>100_bases
CCGCGCGGCCAAGGAAGCCAAGAAGAAGGCCGCCGCGGAAGGCGCCTGACGGCGTGGATCGGTCGGCGCCGCCCGTGGCC
CGGCAGGGAGGATAGGCAGG

Downstream 100 bases:

>100_bases
AGGCATGCGCCCTCGGGCGTCCGTGGCCAGCGATATTGGAGAGTCCCAGCCGCATGCAGGTGCTGAAAGACAAGGTGTCG
AGGACGCCGCGCCGAGCTTC

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MPAPLSNVRVLELGRVFAAPWAGQLLADLGAEVIKVEALDGDPMRQMGLGVVRDAEGRETSDRSVFVAVNRNKKSIAVDL
AAEGGAELVRRLAASCDVFIENYKVGDLARRGLDYEAIRAVRPDVIYLSVTGYGQTGPYRERPGMDNIVQGLTGYMSMTG
RPGDPPQASPVSIMDFSAGMHGALAVVAALYARSSANAGGQHIDLALLDSGLALVGYKMVATLLSGEEPPRGVRTRGYIP
GGAFETADGWFQMTIGADSDWARFCRATERPDLAADPRFADRWLRTDNQEALLADVEAMFRTRPRAHWLKVLNEAGLMAG
AVLTLTEAAEDPQVRARDSVLSIRHALGGELPVVRNPIRMTGTPLCEPQSPPLLGQDADEVLGELLGLGPSEVEALRGKG
VLGAAPARGAGETG

Sequences:

>Translated_414_residues
MPAPLSNVRVLELGRVFAAPWAGQLLADLGAEVIKVEALDGDPMRQMGLGVVRDAEGRETSDRSVFVAVNRNKKSIAVDL
AAEGGAELVRRLAASCDVFIENYKVGDLARRGLDYEAIRAVRPDVIYLSVTGYGQTGPYRERPGMDNIVQGLTGYMSMTG
RPGDPPQASPVSIMDFSAGMHGALAVVAALYARSSANAGGQHIDLALLDSGLALVGYKMVATLLSGEEPPRGVRTRGYIP
GGAFETADGWFQMTIGADSDWARFCRATERPDLAADPRFADRWLRTDNQEALLADVEAMFRTRPRAHWLKVLNEAGLMAG
AVLTLTEAAEDPQVRARDSVLSIRHALGGELPVVRNPIRMTGTPLCEPQSPPLLGQDADEVLGELLGLGPSEVEALRGKG
VLGAAPARGAGETG
>Mature_413_residues
PAPLSNVRVLELGRVFAAPWAGQLLADLGAEVIKVEALDGDPMRQMGLGVVRDAEGRETSDRSVFVAVNRNKKSIAVDLA
AEGGAELVRRLAASCDVFIENYKVGDLARRGLDYEAIRAVRPDVIYLSVTGYGQTGPYRERPGMDNIVQGLTGYMSMTGR
PGDPPQASPVSIMDFSAGMHGALAVVAALYARSSANAGGQHIDLALLDSGLALVGYKMVATLLSGEEPPRGVRTRGYIPG
GAFETADGWFQMTIGADSDWARFCRATERPDLAADPRFADRWLRTDNQEALLADVEAMFRTRPRAHWLKVLNEAGLMAGA
VLTLTEAAEDPQVRARDSVLSIRHALGGELPVVRNPIRMTGTPLCEPQSPPLLGQDADEVLGELLGLGPSEVEALRGKGV
LGAAPARGAGETG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=33.5064935064935, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI300863124, Length=411, Percent_Identity=31.3868613138686, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI300863126, Length=384, Percent_Identity=31.5104166666667, Blast_Score=189, Evalue=4e-48,
Organism=Homo sapiens, GI13376042, Length=411, Percent_Identity=27.007299270073, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI42794625, Length=419, Percent_Identity=24.3436754176611, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI266456254, Length=416, Percent_Identity=24.7596153846154, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI266458393, Length=259, Percent_Identity=29.3436293436293, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=29.3436293436293, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=30.1104972375691, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1788717, Length=430, Percent_Identity=26.5116279069767, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1786222, Length=346, Percent_Identity=25.1445086705202, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=359, Percent_Identity=23.1197771587744, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=207, Percent_Identity=25.6038647342995, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648431, Length=401, Percent_Identity=37.4064837905237, Blast_Score=245, Evalue=4e-65,
Organism=Drosophila melanogaster, GI24585488, Length=263, Percent_Identity=27.3764258555133, Blast_Score=92, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44037; Mature: 43906

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPLSNVRVLELGRVFAAPWAGQLLADLGAEVIKVEALDGDPMRQMGLGVVRDAEGRET
CCCCCCCCEEEEHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCHHHHCCCEEECCCCCCC
SDRSVFVAVNRNKKSIAVDLAAEGGAELVRRLAASCDVFIENYKVGDLARRGLDYEAIRA
CCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHH
VRPDVIYLSVTGYGQTGPYRERPGMDNIVQGLTGYMSMTGRPGDPPQASPVSIMDFSAGM
CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
HGALAVVAALYARSSANAGGQHIDLALLDSGLALVGYKMVATLLSGEEPPRGVRTRGYIP
HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GGAFETADGWFQMTIGADSDWARFCRATERPDLAADPRFADRWLRTDNQEALLADVEAMF
CCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
RTRPRAHWLKVLNEAGLMAGAVLTLTEAAEDPQVRARDSVLSIRHALGGELPVVRNPIRM
HCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCC
TGTPLCEPQSPPLLGQDADEVLGELLGLGPSEVEALRGKGVLGAAPARGAGETG
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCCCCCC
>Mature Secondary Structure 
PAPLSNVRVLELGRVFAAPWAGQLLADLGAEVIKVEALDGDPMRQMGLGVVRDAEGRET
CCCCCCCEEEEHHHHHHCCHHHHHHHHCCCEEEEEEECCCCCHHHHCCCEEECCCCCCC
SDRSVFVAVNRNKKSIAVDLAAEGGAELVRRLAASCDVFIENYKVGDLARRGLDYEAIRA
CCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHH
VRPDVIYLSVTGYGQTGPYRERPGMDNIVQGLTGYMSMTGRPGDPPQASPVSIMDFSAGM
CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
HGALAVVAALYARSSANAGGQHIDLALLDSGLALVGYKMVATLLSGEEPPRGVRTRGYIP
HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GGAFETADGWFQMTIGADSDWARFCRATERPDLAADPRFADRWLRTDNQEALLADVEAMF
CCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
RTRPRAHWLKVLNEAGLMAGAVLTLTEAAEDPQVRARDSVLSIRHALGGELPVVRNPIRM
HCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCC
TGTPLCEPQSPPLLGQDADEVLGELLGLGPSEVEALRGKGVLGAAPARGAGETG
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]