Click here to switch to the map view.

The map label for this gene is cirA [C]

Identifier: 197105963

GI number: 197105963

Start: 2867278

End: 2869833

Strand: Reverse

Name: cirA [C]

Synonym: PHZ_c2502

Alternate gene names: 197105963

Gene position: 2869833-2867278 (Counterclockwise)

Preceding gene: 197105964

Following gene: 197105962

Centisome position: 71.81

GC content: 71.75

Gene sequence:

>2556_bases
ATGATCAAGTCACGTTCGCGGCTGCTGGCCGCGGCGAGCGCCCTGGCCGTCGCCGGCGCGTGCGGCCCGGCCTTCGCCCA
GGAGGCCCCGGCGGTCGAGGAGATCGTCGTCACGGCCCAGAAGCAGCAGCAGCAGGCGATCGACGTGCCGATCGCCCTGA
CGGCCTTCGGCGGCGAGCGGCTGGAGGCCCTGGGCGTCCAAGACTTCGCCGACCTGTCGCTGTTCACGCCCGGCTTCGAG
GTGCAGGACCAGTCGCCGAACAACCCGGGCTTCGTGATGCGCGGCATCACCTCGGACTCCACCGACGCCTTCGCCGAGGC
GCGGGTCTCGGTGTTCCAGGACGGCGTCTCGATCTCGAAGGCCCAGGGCTCGTACGTCGAGCTGTTCGACCTGGAGCGGG
TCGAGGTGGCCAAGGGACCGCAGTCCACGCTGTTCGGTCGCGGCGCCCTGATCGGCGGGGTGAACCTGATCCAGGCCAAG
GCCTCCACCGCCGGCTTCGACGGCTACGCCAAGGTCGAAGCGGGCGACTACAGCTATCGCCTCGGCGAGGCGGCGGTGAA
CGTCCCGCTGGGCGAGCAGGCGGCGCTGCGTCTGGCCGGCAGGGTCCGCTACCGCGACGGCTATGTGGACAACGCCCTGG
GCGGCGACGCCTTCCAGTCCGTGGACACCCGCGCCGCGCGGGCCAGCCTGAAGCTCGAGCCGGCCGACCGCGTCAGCATC
GACATCATCGCCAACTACCAGGAGGACGATCCCACCGGGACGGCCTTCAAGTCGGGCGGCTTCTCGCCGACCGATCCGAC
CACGGGCCGGGTGCTGGACGACCGGCGCCCGCAGAGCGCGGCGGCCCTGACGGCGCCGGCGAACTTCCAGGGCGGGCGGC
AGCTCGGCATCGATCGCAAGGTCTGGGGCGTGACCGGCCTCGCCAGCTTCGAGCTGACCCCCTCGCTGACGCTGAACTCG
ATCAGCGCCTACCGGGAGTACGAGAGCCAGGAGACGTTCGACCCGGACGGCCTGTCGCTGCCGATCCTCACCGGCCTGAA
CGACGGCCGCGGCGAGCAGTGGAGCCAGGAACTGCGGCTCAACTTCGATGGCGGCGGCCGCGTCCGCGGCTTCGTCGGCG
CGGGCCTCTTCAAGGCGGACGACGACCAGCGCACGCCGATCCAGTTCGACGAGCGCATCGCGCTGGCGGTGGTGACGGGC
CAGCTCAACGCCTCGGCGGCGGGCTCGGGCCTGCCGGCGACGGCGCCGGCGCCGGCGGCGGTGTTCGGCAACACCGCCTT
CACCGGCGCGCTGCTGCGCGGGCTGGTGGCGAACCTGAGCGGCAATCGGCTCGTGCTCACGCCCGCCCAGGCTACGGCCA
TCGCCGCGAACCTGCGCGCGAACCATCTGGAGGAGTCGACCAACACCTCGGACCTCGACTCGTTCGATCTCTTCGCCGAC
GTCAGCGTGGACGTCACCGACCGGCTCGAGGTCTCGGCCGGCGTCCGCTACACCCGCGACGAGAAGACCACCGGCTTCGG
CAGCCGCGTGGTCGGCGGTCGCAGCGTCCTGGGCGGGGCGATCGGGGCGGCCCAGCTCGCCGAGTCCGGCACGGCCCAGG
GCCTGGCCCAGGCGCAGGCCATCGTCGGGGCCTTGCAGTCGCCCGGCGTGCAGCAGATCCCTGACAGCGTGCTGCCGCTG
TTCGGCCTGACCTTCCAGCCGACCACCGGCAACGGCCTGGTCTCGGAACAGGACCTGACCGACGACGGCGTCACCTGGCG
CCTGGTGGCCCGCTACGAGCTGTCGGGCGACGCCAACGTCTACGCCTCGTACGCCCGCGGCCGCCGGCCCGAGGTGCTGG
CGGCGTCCGGTCCGGCCGCGCCCGGAACCGCGGGCCGCTTCACCCGGGTGGAGGCCGAGACGGTGGACAGCTACGAGGTC
GGCGCCAAGGCGGCCCTGCTGGACCGGCGGCTGCGCCTGGACGTCTCGGCCTACCGCTACGACTACGACAACTTCCAGAC
CGTCGAGCAGCGCGGCACGCTGTTCGTGACCACCAACGCGGGCAAGGCCAAGGCCTACGGCGTCGAGGGCCAGGCGGACC
TGGCGATCGCCCGCGGGCTGAACCTGCTGGCGACCTACGCCTACAGCCATGCGCGGTTCGAGAGCGGCGCCTACGACGGC
AACCGCTTCCGCCTGTCGCCGGACCATTCGGCTTCGCTGGCCGCCTCCTGGCGCACAGCGCTCGGCGCCGGCGAGCTGGA
AGTGCGTCCCAGCTACACCTGGCAGTCCAAGGTCTACTTCGACAACAGCAACGACCGGCCGGCCTTCCAGCAGCCGCCGA
ACGTGTTCGTCGCCGACAACCTCGTGGACGAGTTCCAGAAGGCCTACGGCCTCCTGAACCTGCGGGTCGCCTGGACCGCG
GACCGCGCGCCGGTGACCCTGGAGGCCTTCGTCACCAACCTGACCGACGAGGACTACATCATCGACGCCGGCAACACGGG
CGACAACCTGGGCCTGCCGACGTTCATCGCCGGCCCGCCGCGGATGGCGGGCGTCGGGATCAGCTACCGGTACTGA

Upstream 100 bases:

>100_bases
GCCGGTGACCGGCCGCGTCTGAGGCGCGGCGGCTGTCACGAGTTCTTAGCAGTCGCAGCTTACGGCCGATCCTACGCGTC
CAAGCGTAGGGGATAGTTCA

Downstream 100 bases:

>100_bases
CGAGAGTGGGAGGGGCCGCGCCCGCGCGCGGCCCCTTGCCCTTCCGTAGAGGTCACCCGCTAGGGTCCCGCCAAATCAGG
AGGGGACCCCCAATGATCGG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor Domain Protein; NB-Dependent Receptor-Like Protein; Nb-Dependent Receptor; NB-Dependent Receptor Plug Domain Protein; NB Dependent Receptor; Outer Membrane Protein; NB-Dependent Receptor Protein; Transporter OMR Family; NB-Dependent Outer Membrane Receptor

Number of amino acids: Translated: 851; Mature: 851

Protein sequence:

>851_residues
MIKSRSRLLAAASALAVAGACGPAFAQEAPAVEEIVVTAQKQQQQAIDVPIALTAFGGERLEALGVQDFADLSLFTPGFE
VQDQSPNNPGFVMRGITSDSTDAFAEARVSVFQDGVSISKAQGSYVELFDLERVEVAKGPQSTLFGRGALIGGVNLIQAK
ASTAGFDGYAKVEAGDYSYRLGEAAVNVPLGEQAALRLAGRVRYRDGYVDNALGGDAFQSVDTRAARASLKLEPADRVSI
DIIANYQEDDPTGTAFKSGGFSPTDPTTGRVLDDRRPQSAAALTAPANFQGGRQLGIDRKVWGVTGLASFELTPSLTLNS
ISAYREYESQETFDPDGLSLPILTGLNDGRGEQWSQELRLNFDGGGRVRGFVGAGLFKADDDQRTPIQFDERIALAVVTG
QLNASAAGSGLPATAPAPAAVFGNTAFTGALLRGLVANLSGNRLVLTPAQATAIAANLRANHLEESTNTSDLDSFDLFAD
VSVDVTDRLEVSAGVRYTRDEKTTGFGSRVVGGRSVLGGAIGAAQLAESGTAQGLAQAQAIVGALQSPGVQQIPDSVLPL
FGLTFQPTTGNGLVSEQDLTDDGVTWRLVARYELSGDANVYASYARGRRPEVLAASGPAAPGTAGRFTRVEAETVDSYEV
GAKAALLDRRLRLDVSAYRYDYDNFQTVEQRGTLFVTTNAGKAKAYGVEGQADLAIARGLNLLATYAYSHARFESGAYDG
NRFRLSPDHSASLAASWRTALGAGELEVRPSYTWQSKVYFDNSNDRPAFQQPPNVFVADNLVDEFQKAYGLLNLRVAWTA
DRAPVTLEAFVTNLTDEDYIIDAGNTGDNLGLPTFIAGPPRMAGVGISYRY

Sequences:

>Translated_851_residues
MIKSRSRLLAAASALAVAGACGPAFAQEAPAVEEIVVTAQKQQQQAIDVPIALTAFGGERLEALGVQDFADLSLFTPGFE
VQDQSPNNPGFVMRGITSDSTDAFAEARVSVFQDGVSISKAQGSYVELFDLERVEVAKGPQSTLFGRGALIGGVNLIQAK
ASTAGFDGYAKVEAGDYSYRLGEAAVNVPLGEQAALRLAGRVRYRDGYVDNALGGDAFQSVDTRAARASLKLEPADRVSI
DIIANYQEDDPTGTAFKSGGFSPTDPTTGRVLDDRRPQSAAALTAPANFQGGRQLGIDRKVWGVTGLASFELTPSLTLNS
ISAYREYESQETFDPDGLSLPILTGLNDGRGEQWSQELRLNFDGGGRVRGFVGAGLFKADDDQRTPIQFDERIALAVVTG
QLNASAAGSGLPATAPAPAAVFGNTAFTGALLRGLVANLSGNRLVLTPAQATAIAANLRANHLEESTNTSDLDSFDLFAD
VSVDVTDRLEVSAGVRYTRDEKTTGFGSRVVGGRSVLGGAIGAAQLAESGTAQGLAQAQAIVGALQSPGVQQIPDSVLPL
FGLTFQPTTGNGLVSEQDLTDDGVTWRLVARYELSGDANVYASYARGRRPEVLAASGPAAPGTAGRFTRVEAETVDSYEV
GAKAALLDRRLRLDVSAYRYDYDNFQTVEQRGTLFVTTNAGKAKAYGVEGQADLAIARGLNLLATYAYSHARFESGAYDG
NRFRLSPDHSASLAASWRTALGAGELEVRPSYTWQSKVYFDNSNDRPAFQQPPNVFVADNLVDEFQKAYGLLNLRVAWTA
DRAPVTLEAFVTNLTDEDYIIDAGNTGDNLGLPTFIAGPPRMAGVGISYRY
>Mature_851_residues
MIKSRSRLLAAASALAVAGACGPAFAQEAPAVEEIVVTAQKQQQQAIDVPIALTAFGGERLEALGVQDFADLSLFTPGFE
VQDQSPNNPGFVMRGITSDSTDAFAEARVSVFQDGVSISKAQGSYVELFDLERVEVAKGPQSTLFGRGALIGGVNLIQAK
ASTAGFDGYAKVEAGDYSYRLGEAAVNVPLGEQAALRLAGRVRYRDGYVDNALGGDAFQSVDTRAARASLKLEPADRVSI
DIIANYQEDDPTGTAFKSGGFSPTDPTTGRVLDDRRPQSAAALTAPANFQGGRQLGIDRKVWGVTGLASFELTPSLTLNS
ISAYREYESQETFDPDGLSLPILTGLNDGRGEQWSQELRLNFDGGGRVRGFVGAGLFKADDDQRTPIQFDERIALAVVTG
QLNASAAGSGLPATAPAPAAVFGNTAFTGALLRGLVANLSGNRLVLTPAQATAIAANLRANHLEESTNTSDLDSFDLFAD
VSVDVTDRLEVSAGVRYTRDEKTTGFGSRVVGGRSVLGGAIGAAQLAESGTAQGLAQAQAIVGALQSPGVQQIPDSVLPL
FGLTFQPTTGNGLVSEQDLTDDGVTWRLVARYELSGDANVYASYARGRRPEVLAASGPAAPGTAGRFTRVEAETVDSYEV
GAKAALLDRRLRLDVSAYRYDYDNFQTVEQRGTLFVTTNAGKAKAYGVEGQADLAIARGLNLLATYAYSHARFESGAYDG
NRFRLSPDHSASLAASWRTALGAGELEVRPSYTWQSKVYFDNSNDRPAFQQPPNVFVADNLVDEFQKAYGLLNLRVAWTA
DRAPVTLEAFVTNLTDEDYIIDAGNTGDNLGLPTFIAGPPRMAGVGISYRY

Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 90147; Mature: 90147

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSRSRLLAAASALAVAGACGPAFAQEAPAVEEIVVTAQKQQQQAIDVPIALTAFGGER
CCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH
LEALGVQDFADLSLFTPGFEVQDQSPNNPGFVMRGITSDSTDAFAEARVSVFQDGVSISK
HHHCCCCCCCCCEEECCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEC
AQGSYVELFDLERVEVAKGPQSTLFGRGALIGGVNLIQAKASTAGFDGYAKVEAGDYSYR
CCCCEEEEEECCEEEECCCCCHHHCCCCEEECCCEEEEECCCCCCCCCEEEEECCCCEEE
LGEAAVNVPLGEQAALRLAGRVRYRDGYVDNALGGDAFQSVDTRAARASLKLEPADRVSI
ECCEEEECCCCHHHHHHHHCEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCEEE
DIIANYQEDDPTGTAFKSGGFSPTDPTTGRVLDDRRPQSAAALTAPANFQGGRQLGIDRK
EEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCE
VWGVTGLASFELTPSLTLNSISAYREYESQETFDPDGLSLPILTGLNDGRGEQWSQELRL
EECCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEE
NFDGGGRVRGFVGAGLFKADDDQRTPIQFDERIALAVVTGQLNASAAGSGLPATAPAPAA
EECCCCEEEEEEECCCEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHH
VFGNTAFTGALLRGLVANLSGNRLVLTPAQATAIAANLRANHLEESTNTSDLDSFDLFAD
EECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHEEHHHHHHHCCCCCCCCCCCCEEEEEE
VSVDVTDRLEVSAGVRYTRDEKTTGFGSRVVGGRSVLGGAIGAAQLAESGTAQGLAQAQA
CEECCCCCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
IVGALQSPGVQQIPDSVLPLFGLTFQPTTGNGLVSEQDLTDDGVTWRLVARYELSGDANV
HHHHHCCCCHHHCCHHHHHHHCCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCE
YASYARGRRPEVLAASGPAAPGTAGRFTRVEAETVDSYEVGAKAALLDRRLRLDVSAYRY
EEHHHCCCCCCEEEECCCCCCCCCCCEEEEEHHCCCCHHCCCHHHHHHHHHEEEEEEEEE
DYDNFQTVEQRGTLFVTTNAGKAKAYGVEGQADLAIARGLNLLATYAYSHARFESGAYDG
CCCCHHHHHHCCCEEEEECCCCCEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCC
NRFRLSPDHSASLAASWRTALGAGELEVRPSYTWQSKVYFDNSNDRPAFQQPPNVFVADN
CEEEECCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEHH
LVDEFQKAYGLLNLRVAWTADRAPVTLEAFVTNLTDEDYIIDAGNTGDNLGLPTFIAGPP
HHHHHHHHHCEEEEEEEEECCCCCEEHHHHHHCCCCCCEEEECCCCCCCCCCCCEECCCC
RMAGVGISYRY
CCEECCEEECC
>Mature Secondary Structure
MIKSRSRLLAAASALAVAGACGPAFAQEAPAVEEIVVTAQKQQQQAIDVPIALTAFGGER
CCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH
LEALGVQDFADLSLFTPGFEVQDQSPNNPGFVMRGITSDSTDAFAEARVSVFQDGVSISK
HHHCCCCCCCCCEEECCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEC
AQGSYVELFDLERVEVAKGPQSTLFGRGALIGGVNLIQAKASTAGFDGYAKVEAGDYSYR
CCCCEEEEEECCEEEECCCCCHHHCCCCEEECCCEEEEECCCCCCCCCEEEEECCCCEEE
LGEAAVNVPLGEQAALRLAGRVRYRDGYVDNALGGDAFQSVDTRAARASLKLEPADRVSI
ECCEEEECCCCHHHHHHHHCEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCEEE
DIIANYQEDDPTGTAFKSGGFSPTDPTTGRVLDDRRPQSAAALTAPANFQGGRQLGIDRK
EEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCE
VWGVTGLASFELTPSLTLNSISAYREYESQETFDPDGLSLPILTGLNDGRGEQWSQELRL
EECCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEE
NFDGGGRVRGFVGAGLFKADDDQRTPIQFDERIALAVVTGQLNASAAGSGLPATAPAPAA
EECCCCEEEEEEECCCEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHH
VFGNTAFTGALLRGLVANLSGNRLVLTPAQATAIAANLRANHLEESTNTSDLDSFDLFAD
EECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHEEHHHHHHHCCCCCCCCCCCCEEEEEE
VSVDVTDRLEVSAGVRYTRDEKTTGFGSRVVGGRSVLGGAIGAAQLAESGTAQGLAQAQA
CEECCCCCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
IVGALQSPGVQQIPDSVLPLFGLTFQPTTGNGLVSEQDLTDDGVTWRLVARYELSGDANV
HHHHHCCCCHHHCCHHHHHHHCCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCE
YASYARGRRPEVLAASGPAAPGTAGRFTRVEAETVDSYEVGAKAALLDRRLRLDVSAYRY
EEHHHCCCCCCEEEECCCCCCCCCCCEEEEEHHCCCCHHCCCHHHHHHHHHEEEEEEEEE
DYDNFQTVEQRGTLFVTTNAGKAKAYGVEGQADLAIARGLNLLATYAYSHARFESGAYDG
CCCCHHHHHHCCCEEEEECCCCCEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCC
NRFRLSPDHSASLAASWRTALGAGELEVRPSYTWQSKVYFDNSNDRPAFQQPPNVFVADN
CEEEECCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEHH
LVDEFQKAYGLLNLRVAWTADRAPVTLEAFVTNLTDEDYIIDAGNTGDNLGLPTFIAGPP
HHHHHHHHHCEEEEEEEEECCCCCEEHHHHHHCCCCCCEEEECCCCCCCCCCCCEECCCC
RMAGVGISYRY
CCEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA