| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is fyuA [H]
Identifier: 197105869
GI number: 197105869
Start: 2740955
End: 2743150
Strand: Reverse
Name: fyuA [H]
Synonym: PHZ_c2408
Alternate gene names: 197105869
Gene position: 2743150-2740955 (Counterclockwise)
Preceding gene: 197105870
Following gene: 197105868
Centisome position: 68.64
GC content: 66.17
Gene sequence:
>2196_bases ATGAGCAACGTCGTTTCTAAGGGGCGCCTGCTGCTGCTGGCGACCGCCGCCGCCTGCTTGCCTGCGGCGGTCCAGGCGCA GGCTCCCGCCACAGGAGCCGCGGCCCAGACGGAGGCGAACGCCGCCGCCAGCGAGACCGCCCTCGACGTGGTCGTCGTCA CCGCGCAACGGCGCGTGCAGCGCGGTAATGACGTCGGCATCGCGATGAATGTGGTCTCGGGCGGCGAACTGGAAGCCGCT GGCGTGAGACAGGTGGTCGATCTGGCGACCCAGACGACGAATGTGCAGATCAAGAACACGCTCGGCGGCAGCGTGCCGAA CGTGACGATCCGCGGCATCGGCCTGAACGACTACGCCTCGAACAACAATCCCGCCGCGGGCGTCTACGTCGACAACGTGT ACCTCGTCTCGCCGGCGATGCTTTCGTTCGGCCTCTTCGATGTCGATCGGGTTGAGGTGCTGAAGGGGCCGCAAGGCGAT CTCTACGGCCGCAACACCACGGCCGGCGCCATCAACATCATCAGCAAGCGACCGACCGAGGCCGCCGACGCCGAGTTTCA GGTCGGCTACGGGACCTACGACAGCTGGCTGCTGAACGGAGCCGTCGGCGGCCCCCTCGCGCCCACCCTGGCTGGCCGCT TCGCCTTCACCACCGAGCAGCAGGCCTCAGGCTGGCAGCGCAACTACGTGACGGGCGAGCGCAACGGCAGGATCGACCGA ACCGCGGCGCGCCTGCATCTGGAATGGACCCCGTCAGAGGCGGTGACCGCTCTGCTCAGCGCGCACGCCGGTTACGACCG TTCGGACCAGTCGCTGTACAAGGTCGACAATGTGCTGACGACCGACGAGGACGCCTTCGCCGGGCGGCCCCGGATCGCCG GCGCCAGCAACAATCCCGAGGTCGATCTGAAATCGGCCGGGGTTTCGCTGACGGTGGACTGGGCCCTGGCGGAAGGCCTG ACCCTCACGTCGATTTCGGCCTACGAGCGCTTCACTCGCGTGGACGTCGGCGACCAGGACGGGACGCGGCTGCGGCAGCT CGACAGCACCTTCCGCAACCGCATCAATCAGACCTCGCAGGAGCTGCGGCTCGCCTATTCGCGAGAGGCGCTGACCCTGA TCGGCGGCGCCTACTACTCGCGAGACACCGTCGCCACCCAGGACAGCTATGACGCGCCCGATCTGCTTCCGCTGCTTGGC CTGAGCGGCATCTCGACGATCGGCAACCGCTACCACCAGCGCACCAAGGCCTATGCGGTCTTCCTGCACGGCGAGTGGGA GATCGTCCCGAAGCTGACCCTGGTGAGCGGCATCCGCTACACGAAGGAGCGCAAGAGGCTCGATGATGCGACAACCTTCC TGGGGCCGACCGGCGGCGGGGAAGTGGATGTCTTCGCGCCCGTCGAGAACTTCTTCCGGACCTCGAACGTCTCGGGGAAG CTCGGCGTCAACTACAAGCTTCTGGATGACACCCTGCTCTATGCGAGCGTCAGCCGCGGCTTCAAATCGGGCGGTTTCCA GGGGCAGCTGACGTTCGATCCCTCGGCCCTGACGCCCTTCGACGATGAAAAGCTCACCGCCTACGAGGTGGGCGTGAAGA GCCGGGTCCTTCCGAACCTTCAGGTCAACGCCTCGGCGTTCAACTACGACTACGAGGACTCGCAGTTCTACGGGCCGCTC TTCGACTCTCCGGTGGGTGTCCTGTTCGGCATCACCAACGTGGGCGACGCCCGGGTTCGTGGTGTCGAGGGCGACGTGAC CTGGAGACCTGTGGCCGGCCTCGATCTGCGCGTGGGCGCCGGCTACATCGACACGGAGATCACGAGGTCCATCGTGCCTG GCGTGGCGAAGGGCAGCCGACTGCCGAACGCCCCCGAGTTCACGCTCAACGGTTCGGTGAAATACGCCTGGACCGTGACC GACGACGCGGAAGCGGACATCTCCCTCTCGGCCGCCTATCAGAGCCGCGTCGCCTTCGACATCGTCCGCAATCCGCCGGA AGCTCGCGAGGGCGGCTACACCACCGTGAACGGTGAAGCTGGGCTGAACCTCGGTGAGAATTTCCGGATCGCGGTCTGGG GCAAGAACCTGTTCAACGAACTGCATCGCACCCAGGCCCTCTTCACGAGCGCCGGCTGGAGCGAACAGTACAGTGCGCCG CGCACCTTCGGCGTGAAGCTGTCCTGGCAGAACTGA
Upstream 100 bases:
>100_bases CAAGCGCACCTACGCCACACCCAGAGCCAAAGAGATCATCGGCTTCAACATTCCAAGGACCGCCGTCTGAGCGGATCTTC TCGGGGAGGGGACTTCAATC
Downstream 100 bases:
>100_bases TCGACACCTTGAGCCGGGGCGGGGCGTTGCTCCGCCCCGGCCACAGGGCTCGCCGCTCGGGCGCGATATGAAGCGAGCGG GGCCCAAGGCCCTTAGCTAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 731; Mature: 730
Protein sequence:
>731_residues MSNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQRGNDVGIAMNVVSGGELEAA GVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYASNNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGD LYGRNTTAGAINIISKRPTEAADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPEVDLKSAGVSLTVDWALAEGL TLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLG LSGISTIGNRYHQRTKAYAVFLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNLQVNASAFNYDYEDSQFYGPL FDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGAGYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVT DDAEADISLSAAYQSRVAFDIVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP RTFGVKLSWQN
Sequences:
>Translated_731_residues MSNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQRGNDVGIAMNVVSGGELEAA GVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYASNNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGD LYGRNTTAGAINIISKRPTEAADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPEVDLKSAGVSLTVDWALAEGL TLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLG LSGISTIGNRYHQRTKAYAVFLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNLQVNASAFNYDYEDSQFYGPL FDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGAGYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVT DDAEADISLSAAYQSRVAFDIVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP RTFGVKLSWQN >Mature_730_residues SNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQRGNDVGIAMNVVSGGELEAAG VRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYASNNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGDL YGRNTTAGAINIISKRPTEAADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDRT AARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPEVDLKSAGVSLTVDWALAEGLT LTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLGL SGISTIGNRYHQRTKAYAVFLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGKL GVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNLQVNASAFNYDYEDSQFYGPLF DSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGAGYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVTD DAEADISLSAAYQSRVAFDIVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAPR TFGVKLSWQN
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 78638; Mature: 78507
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQ CCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECHHHHH RGNDVGIAMNVVSGGELEAAGVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYAS CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCC NNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGDLYGRNTTAGAINIISKRPTE CCCCEEEEEECCEEEECHHHHHCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCC AADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR CCCCEEEECCCCHHHHEECCCCCCCCCHHHCCCEEEECCHHHCCCCCCCCCCCCCCCEEE TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPE EEEEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCEEECCCHHHCCCCCCCCCCCCCC VDLKSAGVSLTVDWALAEGLTLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQ EEEECCCEEEEEEEHHHCCCEEEEHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH ELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLGLSGISTIGNRYHQRTKAYAV HHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCEEEEE FLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK EEECCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHCCCCCE LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNL ECCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHCCCCC QVNASAFNYDYEDSQFYGPLFDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGA EEECEEECCCCCCCCEECCCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCEEEEECC GYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVTDDAEADISLSAAYQSRVAFD CCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCEEEEEHHHHHEEEE IVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP ECCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHCCCC RTFGVKLSWQN CEEEEEEEECC >Mature Secondary Structure SNVVSKGRLLLLATAAACLPAAVQAQAPATGAAAQTEANAAASETALDVVVVTAQRRVQ CCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECHHHHH RGNDVGIAMNVVSGGELEAAGVRQVVDLATQTTNVQIKNTLGGSVPNVTIRGIGLNDYAS CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCC NNNPAAGVYVDNVYLVSPAMLSFGLFDVDRVEVLKGPQGDLYGRNTTAGAINIISKRPTE CCCCEEEEEECCEEEECHHHHHCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCC AADAEFQVGYGTYDSWLLNGAVGGPLAPTLAGRFAFTTEQQASGWQRNYVTGERNGRIDR CCCCEEEECCCCHHHHEECCCCCCCCCHHHCCCEEEECCHHHCCCCCCCCCCCCCCCEEE TAARLHLEWTPSEAVTALLSAHAGYDRSDQSLYKVDNVLTTDEDAFAGRPRIAGASNNPE EEEEEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHCCEEECCCHHHCCCCCCCCCCCCCC VDLKSAGVSLTVDWALAEGLTLTSISAYERFTRVDVGDQDGTRLRQLDSTFRNRINQTSQ EEEECCCEEEEEEEHHHCCCEEEEHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH ELRLAYSREALTLIGGAYYSRDTVATQDSYDAPDLLPLLGLSGISTIGNRYHQRTKAYAV HHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCEEEEE FLHGEWEIVPKLTLVSGIRYTKERKRLDDATTFLGPTGGGEVDVFAPVENFFRTSNVSGK EEECCEEEEEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHCCCCCE LGVNYKLLDDTLLYASVSRGFKSGGFQGQLTFDPSALTPFDDEKLTAYEVGVKSRVLPNL ECCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHCCCCC QVNASAFNYDYEDSQFYGPLFDSPVGVLFGITNVGDARVRGVEGDVTWRPVAGLDLRVGA EEECEEECCCCCCCCEECCCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCEEEEECC GYIDTEITRSIVPGVAKGSRLPNAPEFTLNGSVKYAWTVTDDAEADISLSAAYQSRVAFD CCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCEEEEEHHHHHEEEE IVRNPPEAREGGYTTVNGEAGLNLGENFRIAVWGKNLFNELHRTQALFTSAGWSEQYSAP ECCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHCCCC RTFGVKLSWQN CEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA