| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197105761
Identifier: 197105761
GI number: 197105761
Start: 2604606
End: 2606000
Strand: Direct
Name: 197105761
Synonym: PHZ_c2299
Alternate gene names: NA
Gene position: 2604606-2606000 (Clockwise)
Preceding gene: 197105760
Following gene: 197105764
Centisome position: 65.18
GC content: 74.7
Gene sequence:
>1395_bases ATGCGCTCGCCTGACGCCGGCCTGAGCCCCAGAGAGGTCGTCGCCGCCGGCCTCTGCATCGGCTGCGGCGGCTGCGCGGC AGGCGGACGGACGGCTGGGGCCCGGGTCGGCTTCGACCGCTTCGGACGGCTGCGTCCGGAGGGCCCGAAGGCCTGGCTCG GCCGGCGCAGCGAGGTCTTCGCCCGCACCTGCCCGTCCTCGCCCGCGGCCCGCGACGAGGACGCCCTGGCGCTGGAGCTC TACCCGGACGCGCCCTTCGCCGATCCCTGCATCGGCCGCTTCCGGGCCGCCTACGTCGGGGCGGCGGCCGAGGGCGATTT CCGGGCCGCCGGCAGCTCGGGGGGCATGGTCACCTGGACCGCGGCCGAGCTGATGCGGCGCGGGCTGATCGACGGCGTTG CGCACGTGAAGCCCGCCCCCTCGCCACGCGGACAGGCGCCGTTCTTCCGCTACGGGGTCTCGCGCAGCGAGGCCGAGCTG CGGGCGGGCGCCAAGTCCCGCTACTACCCGATCGAGATGTCGGGCGTGCTGGACGAGATCCGCCGCACGCCCGGCCGCTA CGCCGTGGTCGGGGTGCCCTGCTTCATCAAGGCGGTGCGGCTGCTCTGCCGCGAGGACCCCGTCCTGCGCGAGCGCGTCG CCTTCACCCTCGGCCTGTTCTGCGGCCACATGAAGAGCGCCCGGCTGGTCGAGAGCTTCGCCTGGCAGCTCGGGACGCAG GTCGAGGCGGTGGAGGCCGTGGATTTCCGCGCCAAGGATCCCGGCCGACCGGCCAACTGGTACACTGCACATCTGCGCCT GAAGGACGGCTCGGAGCGCCGGCAGGACTGGTGGCATCTGGCCGACGGGGACTGGGGCGCCGGCTTCTTCCAGTATCCCG CCTGCGACTTCTGCGACGACGTCACCGCCGAGACGGCCGACATCAGCTTCGGCGACGCCTGGGTGGAGCCCTATTCCTCC GACGGCCGCGGCACGAACGTGGTGGTGGTCCGGTCATCGGCGCTGGCGGCGATCCTGGCCCAGGGGATCGAGGAGGGCCG GCTCGACCTTTCGCCCGTGGACGCCGACTTCGTGCATGGGACCCAGGCGGCGGGGTTCCGCCAGCGGCGGGAGGGGCTGT CGCTCAGGCTTGCGGGCCGTCGGCGCGGCCTGACGCCCCGCAAGCGGGTCCCGGCGCGGGCGCCGTCGCTCACCTGGCGC CGACGCGCGGTCTACCGCCTGCGCCAAGCCATCGCCGCGGGCAGTCACCGCGTGTTCTGGGCCGCGCAGCGGCTGCGCTG GCCGGGCCTCTACACGCGCTGGGCCAGGGCGAGCCTGGCCGTCTACCAGGGCCTCGCCTGGTCGCACGGCCGCGTGGGCC GGATCGTGGACCGGCTGGACGGCAAGCGCGCCTAG
Upstream 100 bases:
>100_bases GCGCCGTCCGCACTGGACGCCCTGCTGTCGGCGCCGCTGGCCCCGCGGGTGGTGGCCGCCATCGACCACATGCGGCGCCG CTCGGACGCCTACCTCGACC
Downstream 100 bases:
>100_bases GCGAAGATCGCCGCCAGGTCCTCGGCCCCCATCAGCCGATAGCGACCGGGGGCCAGGTCGGCAGGAAGGTCCAGGCCGCC GATGCGGTCCCGGTGCAGCG
Product: coenzyme F420-reducing hydrogenase, beta subunit
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 464; Mature: 464
Protein sequence:
>464_residues MRSPDAGLSPREVVAAGLCIGCGGCAAGGRTAGARVGFDRFGRLRPEGPKAWLGRRSEVFARTCPSSPAARDEDALALEL YPDAPFADPCIGRFRAAYVGAAAEGDFRAAGSSGGMVTWTAAELMRRGLIDGVAHVKPAPSPRGQAPFFRYGVSRSEAEL RAGAKSRYYPIEMSGVLDEIRRTPGRYAVVGVPCFIKAVRLLCREDPVLRERVAFTLGLFCGHMKSARLVESFAWQLGTQ VEAVEAVDFRAKDPGRPANWYTAHLRLKDGSERRQDWWHLADGDWGAGFFQYPACDFCDDVTAETADISFGDAWVEPYSS DGRGTNVVVVRSSALAAILAQGIEEGRLDLSPVDADFVHGTQAAGFRQRREGLSLRLAGRRRGLTPRKRVPARAPSLTWR RRAVYRLRQAIAAGSHRVFWAAQRLRWPGLYTRWARASLAVYQGLAWSHGRVGRIVDRLDGKRA
Sequences:
>Translated_464_residues MRSPDAGLSPREVVAAGLCIGCGGCAAGGRTAGARVGFDRFGRLRPEGPKAWLGRRSEVFARTCPSSPAARDEDALALEL YPDAPFADPCIGRFRAAYVGAAAEGDFRAAGSSGGMVTWTAAELMRRGLIDGVAHVKPAPSPRGQAPFFRYGVSRSEAEL RAGAKSRYYPIEMSGVLDEIRRTPGRYAVVGVPCFIKAVRLLCREDPVLRERVAFTLGLFCGHMKSARLVESFAWQLGTQ VEAVEAVDFRAKDPGRPANWYTAHLRLKDGSERRQDWWHLADGDWGAGFFQYPACDFCDDVTAETADISFGDAWVEPYSS DGRGTNVVVVRSSALAAILAQGIEEGRLDLSPVDADFVHGTQAAGFRQRREGLSLRLAGRRRGLTPRKRVPARAPSLTWR RRAVYRLRQAIAAGSHRVFWAAQRLRWPGLYTRWARASLAVYQGLAWSHGRVGRIVDRLDGKRA >Mature_464_residues MRSPDAGLSPREVVAAGLCIGCGGCAAGGRTAGARVGFDRFGRLRPEGPKAWLGRRSEVFARTCPSSPAARDEDALALEL YPDAPFADPCIGRFRAAYVGAAAEGDFRAAGSSGGMVTWTAAELMRRGLIDGVAHVKPAPSPRGQAPFFRYGVSRSEAEL RAGAKSRYYPIEMSGVLDEIRRTPGRYAVVGVPCFIKAVRLLCREDPVLRERVAFTLGLFCGHMKSARLVESFAWQLGTQ VEAVEAVDFRAKDPGRPANWYTAHLRLKDGSERRQDWWHLADGDWGAGFFQYPACDFCDDVTAETADISFGDAWVEPYSS DGRGTNVVVVRSSALAAILAQGIEEGRLDLSPVDADFVHGTQAAGFRQRREGLSLRLAGRRRGLTPRKRVPARAPSLTWR RRAVYRLRQAIAAGSHRVFWAAQRLRWPGLYTRWARASLAVYQGLAWSHGRVGRIVDRLDGKRA
Specific function: Unknown
COG id: COG1035
COG function: function code C; Coenzyme F420-reducing hydrogenase, beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50864; Mature: 50864
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSPDAGLSPREVVAAGLCIGCGGCAAGGRTAGARVGFDRFGRLRPEGPKAWLGRRSEVF CCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCHHHH ARTCPSSPAARDEDALALELYPDAPFADPCIGRFRAAYVGAAAEGDFRAAGSSGGMVTWT HHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEE AAELMRRGLIDGVAHVKPAPSPRGQAPFFRYGVSRSEAELRAGAKSRYYPIEMSGVLDEI HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCCCCCEEEHHHHHHHH RRTPGRYAVVGVPCFIKAVRLLCREDPVLRERVAFTLGLFCGHMKSARLVESFAWQLGTQ HCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VEAVEAVDFRAKDPGRPANWYTAHLRLKDGSERRQDWWHLADGDWGAGFFQYPACDFCDD HHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCEEECCCCCCCCCCCCCCCCCCCC VTAETADISFGDAWVEPYSSDGRGTNVVVVRSSALAAILAQGIEEGRLDLSPVDADFVHG CCCCCCCCCCCHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHCC TQAAGFRQRREGLSLRLAGRRRGLTPRKRVPARAPSLTWRRRAVYRLRQAIAAGSHRVFW CHHHHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE AAQRLRWPGLYTRWARASLAVYQGLAWSHGRVGRIVDRLDGKRA EHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure MRSPDAGLSPREVVAAGLCIGCGGCAAGGRTAGARVGFDRFGRLRPEGPKAWLGRRSEVF CCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCHHHH ARTCPSSPAARDEDALALELYPDAPFADPCIGRFRAAYVGAAAEGDFRAAGSSGGMVTWT HHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEE AAELMRRGLIDGVAHVKPAPSPRGQAPFFRYGVSRSEAELRAGAKSRYYPIEMSGVLDEI HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCCCCCEEEHHHHHHHH RRTPGRYAVVGVPCFIKAVRLLCREDPVLRERVAFTLGLFCGHMKSARLVESFAWQLGTQ HCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VEAVEAVDFRAKDPGRPANWYTAHLRLKDGSERRQDWWHLADGDWGAGFFQYPACDFCDD HHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCEEECCCCCCCCCCCCCCCCCCCC VTAETADISFGDAWVEPYSSDGRGTNVVVVRSSALAAILAQGIEEGRLDLSPVDADFVHG CCCCCCCCCCCHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHCC TQAAGFRQRREGLSLRLAGRRRGLTPRKRVPARAPSLTWRRRAVYRLRQAIAAGSHRVFW CHHHHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE AAQRLRWPGLYTRWARASLAVYQGLAWSHGRVGRIVDRLDGKRA EHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA