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The map label for this gene is rodA [H]

Identifier: 197105742

GI number: 197105742

Start: 2583493

End: 2584644

Strand: Reverse

Name: rodA [H]

Synonym: PHZ_c2280

Alternate gene names: 197105742

Gene position: 2584644-2583493 (Counterclockwise)

Preceding gene: 197105743

Following gene: 197105738

Centisome position: 64.68

GC content: 68.14

Gene sequence:

>1152_bases
ATGACCGTCTCGGCCCTCACGCGTCCCGGCGAGCGGGACCGCCTGATCGTCAAGCTGTCCGAGGTGGACTGGCTGTTCGT
CCTGGTGCTCAGCCTGATCGCCGGGGCCGGCGCCCTGATGCTGTTCTCCATCGCCGGCTCGTCCTGGGACCCGTGGGCCG
CCAAGCACGCCTTCCGCTTCGCGCTGTGCCTGGCGATGATGATCGGCCTGGCGATGATCGACATCCGCGTGTGGTTCGCC
ATCGCCTATCCCGTCTATGTGCTGGGTCTGCTGCTGCTGGTGGCGGTGGAGCTGGTCGGGGACACGCGCCTGGGGGCGCA
GCGGTGGCTATCCATCGGCGGCTTCAGCTTCCAGCCGTCCGAGGTGATGAAGATCGGCATCGTGCTGGCGCTGGCGCGCT
ACTACCACGGGACCTCGGCCCAGCGGGCGAGGCTGTCCTGGTGGCTTCTGGTCCCCGCCGGCATGATCGGCCTGCCGGTG
TTGCTGGTGGCGCACCAGCCCGACCTCGGCACCGCCATGCTGATCCTGATGACCGGGGCGGCCATCGTCGTGCTCGCCGG
GCTGTCCTGGAAGATCATCGCCGCCGGCGTGGCGGCGTTCGTGGCCATCGTGCCGCCGTTCGTGATATTCGTGATGCACG
ACTACCAGCGGCAGCGCGTGCTGACCTTCCTGGACCCCGAGAGCGATCCCTCGGGCTCCGGCTACCACATCCTGCAGTCG
ATGATCGCCCTGGGCTCGGGCGGTCTGCTGGGCAAGGGCTACGGCCTGGGCTCGCAGAGCCAGCTCAACTTCCTGCCCGA
GAAGCAGACCGACTTCATCTTCGCGACCCTGGCCGAGGAGTTCGGCTTCGTGGGTTGCGTATCGGTGCTGATCCTCTACG
CCGCGGTGATCTTCATGGCCCTGCGGACCGCCTATGTCAGCCACTCGCATTTCGCCCGCCTGGCCTCCGCGGGCGTGACC
GCCACCTTCACGCTCTACGTCCTGATCAACGGGGCGATGGTGATGGGCCTGGCGCCGGTGGTGGGCGTGCCCATGCCGCT
GCTGTCCTACGGCGGCACGGTGATGCTGACGGTGATGATCGGCTTCGGCCTGGTGCAGTCGGCGCGGGTCCACCGCTACG
CCGAGGTCACCAAGGGCTCGGGCCTCCTCTAG

Upstream 100 bases:

>100_bases
AGCTCGACACCGTGCCCGACAGCCCGGTCTTCGCCGAGCCGCCGAACACGCCGACGCCCGCCGTCGGCGATCCGCTCGTC
CCGCCCTCGGAAGGCCCCGC

Downstream 100 bases:

>100_bases
CGGGCGCAGGCCGGATGCAGGAAGGGCCCCGAGGCGGCCTCGCCCCGGAGCCCTCTATTCCTCCGCCGGAGGAGGGGCCG
CCTACCGGGCGACCATGTCC

Product: rod shape-determining protein RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MTVSALTRPGERDRLIVKLSEVDWLFVLVLSLIAGAGALMLFSIAGSSWDPWAAKHAFRFALCLAMMIGLAMIDIRVWFA
IAYPVYVLGLLLLVAVELVGDTRLGAQRWLSIGGFSFQPSEVMKIGIVLALARYYHGTSAQRARLSWWLLVPAGMIGLPV
LLVAHQPDLGTAMLILMTGAAIVVLAGLSWKIIAAGVAAFVAIVPPFVIFVMHDYQRQRVLTFLDPESDPSGSGYHILQS
MIALGSGGLLGKGYGLGSQSQLNFLPEKQTDFIFATLAEEFGFVGCVSVLILYAAVIFMALRTAYVSHSHFARLASAGVT
ATFTLYVLINGAMVMGLAPVVGVPMPLLSYGGTVMLTVMIGFGLVQSARVHRYAEVTKGSGLL

Sequences:

>Translated_383_residues
MTVSALTRPGERDRLIVKLSEVDWLFVLVLSLIAGAGALMLFSIAGSSWDPWAAKHAFRFALCLAMMIGLAMIDIRVWFA
IAYPVYVLGLLLLVAVELVGDTRLGAQRWLSIGGFSFQPSEVMKIGIVLALARYYHGTSAQRARLSWWLLVPAGMIGLPV
LLVAHQPDLGTAMLILMTGAAIVVLAGLSWKIIAAGVAAFVAIVPPFVIFVMHDYQRQRVLTFLDPESDPSGSGYHILQS
MIALGSGGLLGKGYGLGSQSQLNFLPEKQTDFIFATLAEEFGFVGCVSVLILYAAVIFMALRTAYVSHSHFARLASAGVT
ATFTLYVLINGAMVMGLAPVVGVPMPLLSYGGTVMLTVMIGFGLVQSARVHRYAEVTKGSGLL
>Mature_382_residues
TVSALTRPGERDRLIVKLSEVDWLFVLVLSLIAGAGALMLFSIAGSSWDPWAAKHAFRFALCLAMMIGLAMIDIRVWFAI
AYPVYVLGLLLLVAVELVGDTRLGAQRWLSIGGFSFQPSEVMKIGIVLALARYYHGTSAQRARLSWWLLVPAGMIGLPVL
LVAHQPDLGTAMLILMTGAAIVVLAGLSWKIIAAGVAAFVAIVPPFVIFVMHDYQRQRVLTFLDPESDPSGSGYHILQSM
IALGSGGLLGKGYGLGSQSQLNFLPEKQTDFIFATLAEEFGFVGCVSVLILYAAVIFMALRTAYVSHSHFARLASAGVTA
TFTLYVLINGAMVMGLAPVVGVPMPLLSYGGTVMLTVMIGFGLVQSARVHRYAEVTKGSGLL

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=315, Percent_Identity=46.984126984127, Blast_Score=255, Evalue=3e-69,
Organism=Escherichia coli, GI1786277, Length=326, Percent_Identity=31.9018404907975, Blast_Score=148, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 41071; Mature: 40939

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSALTRPGERDRLIVKLSEVDWLFVLVLSLIAGAGALMLFSIAGSSWDPWAAKHAFRF
CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHH
ALCLAMMIGLAMIDIRVWFAIAYPVYVLGLLLLVAVELVGDTRLGAQRWLSIGGFSFQPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
EVMKIGIVLALARYYHGTSAQRARLSWWLLVPAGMIGLPVLLVAHQPDLGTAMLILMTGA
HHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCHHHHHEEEEECCCCCHHHHHHHHHHH
AIVVLAGLSWKIIAAGVAAFVAIVPPFVIFVMHDYQRQRVLTFLDPESDPSGSGYHILQS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHH
MIALGSGGLLGKGYGLGSQSQLNFLPEKQTDFIFATLAEEFGFVGCVSVLILYAAVIFMA
HHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
LRTAYVSHSHFARLASAGVTATFTLYVLINGAMVMGLAPVVGVPMPLLSYGGTVMLTVMI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
GFGLVQSARVHRYAEVTKGSGLL
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TVSALTRPGERDRLIVKLSEVDWLFVLVLSLIAGAGALMLFSIAGSSWDPWAAKHAFRF
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHH
ALCLAMMIGLAMIDIRVWFAIAYPVYVLGLLLLVAVELVGDTRLGAQRWLSIGGFSFQPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHH
EVMKIGIVLALARYYHGTSAQRARLSWWLLVPAGMIGLPVLLVAHQPDLGTAMLILMTGA
HHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECCCHHHHHEEEEECCCCCHHHHHHHHHHH
AIVVLAGLSWKIIAAGVAAFVAIVPPFVIFVMHDYQRQRVLTFLDPESDPSGSGYHILQS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHH
MIALGSGGLLGKGYGLGSQSQLNFLPEKQTDFIFATLAEEFGFVGCVSVLILYAAVIFMA
HHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
LRTAYVSHSHFARLASAGVTATFTLYVLINGAMVMGLAPVVGVPMPLLSYGGTVMLTVMI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
GFGLVQSARVHRYAEVTKGSGLL
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]