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The map label for this gene is fecI [H]

Identifier: 197105634

GI number: 197105634

Start: 2447581

End: 2448399

Strand: Direct

Name: fecI [H]

Synonym: PHZ_c2171

Alternate gene names: 197105634

Gene position: 2447581-2448399 (Clockwise)

Preceding gene: 197105633

Following gene: 197105635

Centisome position: 61.25

GC content: 64.59

Gene sequence:

>819_bases
ATCACAGGCGGCGAGCGATGGGCTTCAGCTCTTGGGAGTTGGGGTAACGAGGTCAACAGGCGTGCTGTCGAGGGCTTGCG
AGAGCACGAACAGCGAGACCACCGTTGGATTTCGCCGCCCAAGCTCCAGCTCACTGATGTAGCCTTGGGTGAACCCTGTC
CGCTCGGACAGCTGCTCCTGCGTAAGGCCGCGTGCAAGGCGCAAGCGCCTTACATTGCTCCCGACCAGTCGCCGCATATC
CATGCGGCCAAGCTGGACGGAGCTGATGGGTCGGGTTTATCTACTATAGTAGATATTCGGCAGGTGCCCGCCGTGTCCCT
GGGAAAAGCGCTCGACCGCAGCCACTCTGATGCCGCTGAAATCGTGACGGCCACAGACGCAGGTCTGCTCTTCAGACAAC
ACCGGTCTTGGCTACAGAGCTTCCTAGCCCGTCGCTTCGGTGCCGAACTCGCGGAAGACTTAGTCCAAGAGGCCTTCTCC
AGATGCGCCCGCGTAAGCGGCGCCATCTCGAACCCGCGGGCGCTGCTCGCAACCCTCGCGAGGCGCGCGGCGGCCGATCA
GTTTCGGAGGGAGCGGGCGCCTGAGACCGTCGGGGTCGCGGAGCCCGAGGGCGGCTATCTGCCGGACCAGCTCGAGCGGG
TGCTGGTGCAGCAACTTGTGCGCGAGCTACCGCCCAAGGTTCGGGAGGTGTATCTGTTGGTTCGGGTGGTAGGTCTGACC
TACGCCGAGGCGGCGGAGCGGTGCGGGATCTCGGTCAAGCGCGTGGAGGCGCGGATGACCGAGGCCCACAAGCGCTTCGC
CGCCCTGATGCGGGATTAG

Upstream 100 bases:

>100_bases
CCGCCTTGGCCAACAACTGTAGGCCGACCCATTTGCTTAGTCGCCGCCAACTAGGTGTGATCGGCCGCTAGCCCGCTCAG
TTGACGGGACCCCTGCCGCT

Downstream 100 bases:

>100_bases
CGGCGGCGCTTTGGCATGACCGATCAGGCGGAGCTCTCGCGGGCGGAGGCGGAGGCGGCCGAATGGTTCGAGCGGCTGCG
CCGGCCGGCCGTGACGACCC

Product: RNA polymerase sigma-70 factor,ECF subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTGGERWASALGSWGNEVNRRAVEGLREHEQRDHRWISPPKLQLTDVALGEPCPLGQLLLRKAACKAQAPYIAPDQSPHI
HAAKLDGADGSGLSTIVDIRQVPAVSLGKALDRSHSDAAEIVTATDAGLLFRQHRSWLQSFLARRFGAELAEDLVQEAFS
RCARVSGAISNPRALLATLARRAAADQFRRERAPETVGVAEPEGGYLPDQLERVLVQQLVRELPPKVREVYLLVRVVGLT
YAEAAERCGISVKRVEARMTEAHKRFAALMRD

Sequences:

>Translated_272_residues
MTGGERWASALGSWGNEVNRRAVEGLREHEQRDHRWISPPKLQLTDVALGEPCPLGQLLLRKAACKAQAPYIAPDQSPHI
HAAKLDGADGSGLSTIVDIRQVPAVSLGKALDRSHSDAAEIVTATDAGLLFRQHRSWLQSFLARRFGAELAEDLVQEAFS
RCARVSGAISNPRALLATLARRAAADQFRRERAPETVGVAEPEGGYLPDQLERVLVQQLVRELPPKVREVYLLVRVVGLT
YAEAAERCGISVKRVEARMTEAHKRFAALMRD
>Mature_271_residues
TGGERWASALGSWGNEVNRRAVEGLREHEQRDHRWISPPKLQLTDVALGEPCPLGQLLLRKAACKAQAPYIAPDQSPHIH
AAKLDGADGSGLSTIVDIRQVPAVSLGKALDRSHSDAAEIVTATDAGLLFRQHRSWLQSFLARRFGAELAEDLVQEAFSR
CARVSGAISNPRALLATLARRAAADQFRRERAPETVGVAEPEGGYLPDQLERVLVQQLVRELPPKVREVYLLVRVVGLTY
AEAAERCGISVKRVEARMTEAHKRFAALMRD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=159, Percent_Identity=32.7044025157233, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 29919; Mature: 29787

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGGERWASALGSWGNEVNRRAVEGLREHEQRDHRWISPPKLQLTDVALGEPCPLGQLLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHCCCCCCCCHHHHHH
RKAACKAQAPYIAPDQSPHIHAAKLDGADGSGLSTIVDIRQVPAVSLGKALDRSHSDAAE
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHH
IVTATDAGLLFRQHRSWLQSFLARRFGAELAEDLVQEAFSRCARVSGAISNPRALLATLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RRAAADQFRRERAPETVGVAEPEGGYLPDQLERVLVQQLVRELPPKVREVYLLVRVVGLT
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
YAEAAERCGISVKRVEARMTEAHKRFAALMRD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGGERWASALGSWGNEVNRRAVEGLREHEQRDHRWISPPKLQLTDVALGEPCPLGQLLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHCCCCCCCCHHHHHH
RKAACKAQAPYIAPDQSPHIHAAKLDGADGSGLSTIVDIRQVPAVSLGKALDRSHSDAAE
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHH
IVTATDAGLLFRQHRSWLQSFLARRFGAELAEDLVQEAFSRCARVSGAISNPRALLATLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RRAAADQFRRERAPETVGVAEPEGGYLPDQLERVLVQQLVRELPPKVREVYLLVRVVGLT
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
YAEAAERCGISVKRVEARMTEAHKRFAALMRD
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]