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The map label for this gene is ydhC [H]

Identifier: 197105600

GI number: 197105600

Start: 2404964

End: 2405617

Strand: Direct

Name: ydhC [H]

Synonym: PHZ_c2137

Alternate gene names: 197105600

Gene position: 2404964-2405617 (Clockwise)

Preceding gene: 197105599

Following gene: 197105603

Centisome position: 60.18

GC content: 72.78

Gene sequence:

>654_bases
ATGGCGGCGGCAGTCGACAAGGCCTACCAGACCATCCGCGACGGCATCATCAGCGGGGTCTACCAACCGGGCGCCCACCT
GACGGCGCAGGACCTGGCGGCCGCCAGCGGCCTCTCGCGGACACCGGTGCGCGAGGCCATGCGCCGGCTCCAGTCGGAAG
GGCTCATCACCCTCATTCCGCACCGCGGCGCGTTCGTGGCCAACATGGACGAGCGGGACATCCACCGGATCTACGACCTT
CGCGTCGTGCTCGAGAGCTACGCCGCCGAGACCGCCGCGCTGGAGGCCGACGAGGCCAGCATCGCGGCCCTCGAGGATCT
GGCCGCCCAGATGGAGGCGGCGCTGGATCGCGGCGGGCCGCACGTCGTCGAGGAGATCACGCGGCTCAACAACGCCTTCC
ACAAGGCGATCGTCGCCGCGGCGGCCAGCCCGCGGCTGGAGGTGGCGCTGGCCGCGATCGTGGAAGCGCCGCTCGTCCTT
CGCACCTTCCGCCGCTACAGCCTCGAGGAGATGCGCCGCAGCGCCACCCAGCACCTGGAGCTCGTCTCGGCGATCCGGGC
GCGCGACGCCGCATGGGCGCGCAGCGCCATGGCCAGCCACATCCTCTCCGGCCGCAACGCCCTGCTCCGCTCGCTGGCCG
CCGCGGCCGGCTGA

Upstream 100 bases:

>100_bases
TCCAAGTCGCGGCCACCCAGACTCAGTCGAGGCATTGCAGCCTTGCAACCTCGCCCGTTTTGAATGCAATACAGGCTGAG
AGGCGGGGAATACCGAGACT

Downstream 100 bases:

>100_bases
GGCGCCGCCGCCGCCGCCACGTCAGCCCGCCAGGGCCTCGCGTTCGGCGACCTCCGCCAGGTCCGCGCGGATCGAGCGGC
TCGCCAGCACGTGGCAGAGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MAAAVDKAYQTIRDGIISGVYQPGAHLTAQDLAAASGLSRTPVREAMRRLQSEGLITLIPHRGAFVANMDERDIHRIYDL
RVVLESYAAETAALEADEASIAALEDLAAQMEAALDRGGPHVVEEITRLNNAFHKAIVAAAASPRLEVALAAIVEAPLVL
RTFRRYSLEEMRRSATQHLELVSAIRARDAAWARSAMASHILSGRNALLRSLAAAAG

Sequences:

>Translated_217_residues
MAAAVDKAYQTIRDGIISGVYQPGAHLTAQDLAAASGLSRTPVREAMRRLQSEGLITLIPHRGAFVANMDERDIHRIYDL
RVVLESYAAETAALEADEASIAALEDLAAQMEAALDRGGPHVVEEITRLNNAFHKAIVAAAASPRLEVALAAIVEAPLVL
RTFRRYSLEEMRRSATQHLELVSAIRARDAAWARSAMASHILSGRNALLRSLAAAAG
>Mature_216_residues
AAAVDKAYQTIRDGIISGVYQPGAHLTAQDLAAASGLSRTPVREAMRRLQSEGLITLIPHRGAFVANMDERDIHRIYDLR
VVLESYAAETAALEADEASIAALEDLAAQMEAALDRGGPHVVEEITRLNNAFHKAIVAAAASPRLEVALAAIVEAPLVLR
TFRRYSLEEMRRSATQHLELVSAIRARDAAWARSAMASHILSGRNALLRSLAAAAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=205, Percent_Identity=30.2439024390244, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787821, Length=198, Percent_Identity=25.2525252525253, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87081914, Length=187, Percent_Identity=26.7379679144385, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23341; Mature: 23210

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAAVDKAYQTIRDGIISGVYQPGAHLTAQDLAAASGLSRTPVREAMRRLQSEGLITLIP
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEC
HRGAFVANMDERDIHRIYDLRVVLESYAAETAALEADEASIAALEDLAAQMEAALDRGGP
CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
HVVEEITRLNNAFHKAIVAAAASPRLEVALAAIVEAPLVLRTFRRYSLEEMRRSATQHLE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVSAIRARDAAWARSAMASHILSGRNALLRSLAAAAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAAVDKAYQTIRDGIISGVYQPGAHLTAQDLAAASGLSRTPVREAMRRLQSEGLITLIP
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEC
HRGAFVANMDERDIHRIYDLRVVLESYAAETAALEADEASIAALEDLAAQMEAALDRGGP
CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
HVVEEITRLNNAFHKAIVAAAASPRLEVALAAIVEAPLVLRTFRRYSLEEMRRSATQHLE
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVSAIRARDAAWARSAMASHILSGRNALLRSLAAAAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]