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The map label for this gene is rpoZ [H]

Identifier: 197105344

GI number: 197105344

Start: 2108319

End: 2109098

Strand: Reverse

Name: rpoZ [H]

Synonym: PHZ_c1881

Alternate gene names: 197105344

Gene position: 2109098-2108319 (Counterclockwise)

Preceding gene: 197105345

Following gene: 197105343

Centisome position: 52.78

GC content: 71.28

Gene sequence:

>780_bases
CTGACCGCTGGTCCCGCTGCTCGCCGCTCCCGCCTGGCTGCAGGCCGTCCTCGCCGCCGAGGCGCTGGCGCTGGCCTGGC
TCGCCTGGCGGTTCGGCGGGCGCGGGATCGGCTGGGGCGTCGCGGCCGCCGTGGCGTCCTGGCTCCTGTTCGGCCTTGCC
GCCTCGTTTCTGGTCAGCCGGCTCGAGGGCGGCGGCGCGCCGCTGTGGCCCGACATCGTCCGCGGGGCGGGCGAGGGGGC
GGTCCGGCTGGCGGTCGCGGTCCTGCCGCTGCTGCTCATGGCCGCGCTCGGAGGGCTCCTGCTGCGGCGGGTCGTGCGGC
GCAAAGGCCCGGCGGAATAAGGGCTTTTCGCCGATGCGGCGTTGCACAATGGGCCCCGAGGCTCTATTTTCGCCGGTTCT
ATCCCCGACTTGAGGACTCCATGGCCCGCGTCACCGTCGAAGACTGCATCGAAAAGGTCCCGAACCGCTTCTCGCTGGTT
CTGCTGTCGGCGCATCGCGCCCGCGCGATCTCGGCCGGTTCGCAGATCATGGTCGATCGCGACAACGACAAGAACCCGGT
CGTGGCCCTGCGCGAGATCGCCGAGGACGTGGTCGACGCCGAAGAGCTGAAGGAAACCCTCATCGGCACGCTGCAGCGCG
TCGACGAGCGCTCCGAGGCCGAGGAAGAGGCCGAGACCCTCGCCCTGCTGGCCGATCCCACCCACATGCAGATGAGCGAG
CTCGAGCTGGTTCGCGCCCTGCAGAGCGACCGCGACGGCGGTCAGGAGGAGCGGTACTGA

Upstream 100 bases:

>100_bases
CCCTGGAGATCCGCCAGGTCTACGAGCTGGAGGACTTCGGCGACGTCTTCACCGGCGAGGTGAAGGAGGCCTACGACCGC
GCCCTCGGCCAGACCCGGAG

Downstream 100 bases:

>100_bases
GCCCCGAAGGCGCAGAACCACTCACTCACGAGGCGGCGATCGAACCCGCCGCCCTCCCGGAAGCTCGCCCGGCCGAGCCC
AAGGACTCTCCCGCCCAGCT

Product: DNA-directed RNA polymerase,omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTAGPAARRSRLAAGRPRRRGAGAGLARLAVRRARDRLGRRGRRGVLAPVRPCRLVSGQPARGRRRAAVARHRPRGGRGG
GPAGGRGPAAAAHGRARRAPAAAGRAAQRPGGIRAFRRCGVAQWAPRLYFRRFYPRLEDSMARVTVEDCIEKVPNRFSLV
LLSAHRARAISAGSQIMVDRDNDKNPVVALREIAEDVVDAEELKETLIGTLQRVDERSEAEEEAETLALLADPTHMQMSE
LELVRALQSDRDGGQEERY

Sequences:

>Translated_259_residues
MTAGPAARRSRLAAGRPRRRGAGAGLARLAVRRARDRLGRRGRRGVLAPVRPCRLVSGQPARGRRRAAVARHRPRGGRGG
GPAGGRGPAAAAHGRARRAPAAAGRAAQRPGGIRAFRRCGVAQWAPRLYFRRFYPRLEDSMARVTVEDCIEKVPNRFSLV
LLSAHRARAISAGSQIMVDRDNDKNPVVALREIAEDVVDAEELKETLIGTLQRVDERSEAEEEAETLALLADPTHMQMSE
LELVRALQSDRDGGQEERY
>Mature_258_residues
TAGPAARRSRLAAGRPRRRGAGAGLARLAVRRARDRLGRRGRRGVLAPVRPCRLVSGQPARGRRRAAVARHRPRGGRGGG
PAGGRGPAAAAHGRARRAPAAAGRAAQRPGGIRAFRRCGVAQWAPRLYFRRFYPRLEDSMARVTVEDCIEKVPNRFSLVL
LSAHRARAISAGSQIMVDRDNDKNPVVALREIAEDVVDAEELKETLIGTLQRVDERSEAEEEAETLALLADPTHMQMSEL
ELVRALQSDRDGGQEERY

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=50, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 28335; Mature: 28204

Theoretical pI: Translated: 12.05; Mature: 12.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGPAARRSRLAAGRPRRRGAGAGLARLAVRRARDRLGRRGRRGVLAPVRPCRLVSGQP
CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
ARGRRRAAVARHRPRGGRGGGPAGGRGPAAAAHGRARRAPAAAGRAAQRPGGIRAFRRCG
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHCCCHHHCHHHCCCCHHHHHHHCC
VAQWAPRLYFRRFYPRLEDSMARVTVEDCIEKVPNRFSLVLLSAHRARAISAGSQIMVDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCCCEEEEEC
DNDKNPVVALREIAEDVVDAEELKETLIGTLQRVDERSEAEEEAETLALLADPTHMQMSE
CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LELVRALQSDRDGGQEERY
HHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TAGPAARRSRLAAGRPRRRGAGAGLARLAVRRARDRLGRRGRRGVLAPVRPCRLVSGQP
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
ARGRRRAAVARHRPRGGRGGGPAGGRGPAAAAHGRARRAPAAAGRAAQRPGGIRAFRRCG
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHCCCHHHCHHHCCCCHHHHHHHCC
VAQWAPRLYFRRFYPRLEDSMARVTVEDCIEKVPNRFSLVLLSAHRARAISAGSQIMVDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCCCEEEEEC
DNDKNPVVALREIAEDVVDAEELKETLIGTLQRVDERSEAEEEAETLALLADPTHMQMSE
CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LELVRALQSDRDGGQEERY
HHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA