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The map label for this gene is yebA [H]

Identifier: 197105300

GI number: 197105300

Start: 2057325

End: 2058479

Strand: Direct

Name: yebA [H]

Synonym: PHZ_c1837

Alternate gene names: 197105300

Gene position: 2057325-2058479 (Clockwise)

Preceding gene: 197105299

Following gene: 197105301

Centisome position: 51.48

GC content: 71.26

Gene sequence:

>1155_bases
ATGACACGCTTGGCGCGGCTTCGTGGTTCGCTGGAAGAGCTGTTTCCGGAACGTCATCTCTATGTCCGCTCCGGCGGGGC
CATGAAGGCCTTCGTCCTGACCACCTCCAAGCAGATGGCGATCGCCGGGGTCGTCGCCGGCGGCGCGCTCTGGATGGGCG
TCTGCACCGCCGCCATGCTGGTCAACCTGCTGTCCGCCTCGGCGACCGACCGAGAGATCGCGCAGCTCAAGGCGCAGTCC
GAGCGCTACGTAGCCGACCGCCAGGCCCGGCTCGACAGCGCGCTGGCCCGGCTCAACGCCGCCTCGGGCTCGAACGAGGA
CCTCGCCACCACCATCGAGAAGCGCCATGCGGCCCTGGCCCTGCTGCTCACGGACCTGAAGGGCGCGCCCGGCGCGGCCG
AGAACCTGACGCCGGCCATCAACCGCGCCCTGGCCGCCGAGAGCCGCAATCCGGCGCAGCGGGTGGAGATGGTCCGGATC
GGCCAGGAGCAGTTGCTGGACGCCGCCGACAGCTACGCCAAGAGCCGCGCCGAGCGCCTGCGGCTGGCGTTCCGCATGGC
CGGCCTCACCCCCTCCGCCTTCGTTCCCAAGAGTGGCTCGCTGGGCGGCCCGCTGATCGATTCCAAGGACCCCCGCGCCC
TCGCCGCCGTGCTGGACGTCGACGAGGAGTTCGCCCTGCGCATCCAGCGCGCGGCGAAGGACCTGTCGGAGGCGCGCGCG
CTCACCGACGCGGCGGGAGATCTTCCGTTCGGGCGACCGACCGCCTCCGCGCCTCAGACCAGCGGCTACGGTGTCCGGTT
CGATCCGTTCACGCGGCGACCCGCCTTCCACTCGGGCCTGGACTTCGCCGGCGGCCACGCCACGCCGATCCACGCGGCCG
GACCCGGCGTCGTGGCGTTCACCGGCGTCCGGTCCGGCTACGGCAACACCATCGAGATCGACCACGGGCGGGGCCTGAAG
ACCCGCTACGCCCACCTGTCGGCCATCGCGGTGCGGCCGGGTCAGCGCATTGCGATCGGGCAGCGGATCGGCGCCATGGG
CTCGACCGGCCGTTCGACTGGGACGCACCTGCACTATGAGGTATGGGTGAACGGACGCGCCCAGAACCCGGGCCGCTTCC
TCAAGGCCGGCCAGTATGTTCAGCAAGGCGACTAA

Upstream 100 bases:

>100_bases
CGCGCCGCTTTTGCCTGTTTTTTGGCCTAAGCGTCTTGCCTGCCCCGAAAAAGTCATCGCATATCAAGCCGTCGCTTGGG
GCGGGGGCTTAGCGGAACGC

Downstream 100 bases:

>100_bases
GCGTACCGAACCTGCAGCCCCTGCCCCGCCCCCGCGCAAGGCCGCCGTGGCGTCCCTGCTGGCCGAGGGCATGACCATCC
GCGGCGACATCGTCACCGAA

Product: peptidase, M23/M37 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MTRLARLRGSLEELFPERHLYVRSGGAMKAFVLTTSKQMAIAGVVAGGALWMGVCTAAMLVNLLSASATDREIAQLKAQS
ERYVADRQARLDSALARLNAASGSNEDLATTIEKRHAALALLLTDLKGAPGAAENLTPAINRALAAESRNPAQRVEMVRI
GQEQLLDAADSYAKSRAERLRLAFRMAGLTPSAFVPKSGSLGGPLIDSKDPRALAAVLDVDEEFALRIQRAAKDLSEARA
LTDAAGDLPFGRPTASAPQTSGYGVRFDPFTRRPAFHSGLDFAGGHATPIHAAGPGVVAFTGVRSGYGNTIEIDHGRGLK
TRYAHLSAIAVRPGQRIAIGQRIGAMGSTGRSTGTHLHYEVWVNGRAQNPGRFLKAGQYVQQGD

Sequences:

>Translated_384_residues
MTRLARLRGSLEELFPERHLYVRSGGAMKAFVLTTSKQMAIAGVVAGGALWMGVCTAAMLVNLLSASATDREIAQLKAQS
ERYVADRQARLDSALARLNAASGSNEDLATTIEKRHAALALLLTDLKGAPGAAENLTPAINRALAAESRNPAQRVEMVRI
GQEQLLDAADSYAKSRAERLRLAFRMAGLTPSAFVPKSGSLGGPLIDSKDPRALAAVLDVDEEFALRIQRAAKDLSEARA
LTDAAGDLPFGRPTASAPQTSGYGVRFDPFTRRPAFHSGLDFAGGHATPIHAAGPGVVAFTGVRSGYGNTIEIDHGRGLK
TRYAHLSAIAVRPGQRIAIGQRIGAMGSTGRSTGTHLHYEVWVNGRAQNPGRFLKAGQYVQQGD
>Mature_383_residues
TRLARLRGSLEELFPERHLYVRSGGAMKAFVLTTSKQMAIAGVVAGGALWMGVCTAAMLVNLLSASATDREIAQLKAQSE
RYVADRQARLDSALARLNAASGSNEDLATTIEKRHAALALLLTDLKGAPGAAENLTPAINRALAAESRNPAQRVEMVRIG
QEQLLDAADSYAKSRAERLRLAFRMAGLTPSAFVPKSGSLGGPLIDSKDPRALAAVLDVDEEFALRIQRAAKDLSEARAL
TDAAGDLPFGRPTASAPQTSGYGVRFDPFTRRPAFHSGLDFAGGHATPIHAAGPGVVAFTGVRSGYGNTIEIDHGRGLKT
RYAHLSAIAVRPGQRIAIGQRIGAMGSTGRSTGTHLHYEVWVNGRAQNPGRFLKAGQYVQQGD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=105, Percent_Identity=48.5714285714286, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87082174, Length=107, Percent_Identity=36.4485981308411, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=40.4040404040404, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 40758; Mature: 40627

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLARLRGSLEELFPERHLYVRSGGAMKAFVLTTSKQMAIAGVVAGGALWMGVCTAAML
CCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VNLLSASATDREIAQLKAQSERYVADRQARLDSALARLNAASGSNEDLATTIEKRHAALA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LLLTDLKGAPGAAENLTPAINRALAAESRNPAQRVEMVRIGQEQLLDAADSYAKSRAERL
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RLAFRMAGLTPSAFVPKSGSLGGPLIDSKDPRALAAVLDVDEEFALRIQRAAKDLSEARA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LTDAAGDLPFGRPTASAPQTSGYGVRFDPFTRRPAFHSGLDFAGGHATPIHAAGPGVVAF
HHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
TGVRSGYGNTIEIDHGRGLKTRYAHLSAIAVRPGQRIAIGQRIGAMGSTGRSTGTHLHYE
ECCCCCCCCEEEEECCCCCHHHHHHEEEEEECCCCEEEHHHHHCCCCCCCCCCCCEEEEE
VWVNGRAQNPGRFLKAGQYVQQGD
EEECCCCCCCHHHHHHCCHHHCCC
>Mature Secondary Structure 
TRLARLRGSLEELFPERHLYVRSGGAMKAFVLTTSKQMAIAGVVAGGALWMGVCTAAML
CHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VNLLSASATDREIAQLKAQSERYVADRQARLDSALARLNAASGSNEDLATTIEKRHAALA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LLLTDLKGAPGAAENLTPAINRALAAESRNPAQRVEMVRIGQEQLLDAADSYAKSRAERL
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RLAFRMAGLTPSAFVPKSGSLGGPLIDSKDPRALAAVLDVDEEFALRIQRAAKDLSEARA
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LTDAAGDLPFGRPTASAPQTSGYGVRFDPFTRRPAFHSGLDFAGGHATPIHAAGPGVVAF
HHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
TGVRSGYGNTIEIDHGRGLKTRYAHLSAIAVRPGQRIAIGQRIGAMGSTGRSTGTHLHYE
ECCCCCCCCEEEEECCCCCHHHHHHEEEEEECCCCEEEHHHHHCCCCCCCCCCCCEEEEE
VWVNGRAQNPGRFLKAGQYVQQGD
EEECCCCCCCHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]