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The map label for this gene is ygaD [C]

Identifier: 197105198

GI number: 197105198

Start: 1945111

End: 1945602

Strand: Direct

Name: ygaD [C]

Synonym: PHZ_c1735

Alternate gene names: 197105198

Gene position: 1945111-1945602 (Clockwise)

Preceding gene: 197105196

Following gene: 197105201

Centisome position: 48.67

GC content: 70.73

Gene sequence:

>492_bases
ATGTTTTCCTTGGAGATCGTCACCCTCGCCCGGCTCCTGATCGACGAGGCGCGGCAACGATCCCTGAGAATCGTCACGGC
GGAAAGCTGCACCGGCGGCCTGGTCGCCGGGGCGATCTGCTCGATCGCCGGGGCCTCCGACGTCTTCGAGCGCGGGTTCG
TCACCTACTCCAACCGGGCCAAGCAGGAGTTGCTGGGCGTGCCGGGCGACCTGATCGCCGACCTGGGCGCGGTGTCCGAG
CCGGTGGCGCGGATGATGGCGGAAGGCGCGCTCGAGGCCTCCAACGCCCACCTCGCCGTGGCGATCACCGGCGTGGCGGG
TCCCGGCGGCGGCACGCCGATGAAGCCGGTCGGAACGGTCCACATCGCCACCGCGCGCTCCAACGAGCGGATCATGCACC
GCCAGGAGCTGTTCGCGTTCGAGACCCGCGAGGAGATCCAGCTGGCCGCGGTGCAGGCGGCGCTTCAGGCGCTGAGGGAC
CGGCTGGCCTAG

Upstream 100 bases:

>100_bases
GGTCCCGGCGGCGAGCGTGGTCATGTCGTCGTTAGGCCTTGATCGAAGCGGGGCTGGAATGCTTGTGGTCGAGCATTAGC
GGTTAAGGGGACGTGCGCCG

Downstream 100 bases:

>100_bases
GGGCTCGCCACGGTAGCCAGCGGTTCAGCCGGGCGAAATCTCGGGCTGCGCCTTGCCATAGAGGGCCTCCGCGCGGGCCT
CGAAGCAGCCCATCAGCCGC

Product: competence/damage-inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MFSLEIVTLARLLIDEARQRSLRIVTAESCTGGLVAGAICSIAGASDVFERGFVTYSNRAKQELLGVPGDLIADLGAVSE
PVARMMAEGALEASNAHLAVAITGVAGPGGGTPMKPVGTVHIATARSNERIMHRQELFAFETREEIQLAAVQAALQALRD
RLA

Sequences:

>Translated_163_residues
MFSLEIVTLARLLIDEARQRSLRIVTAESCTGGLVAGAICSIAGASDVFERGFVTYSNRAKQELLGVPGDLIADLGAVSE
PVARMMAEGALEASNAHLAVAITGVAGPGGGTPMKPVGTVHIATARSNERIMHRQELFAFETREEIQLAAVQAALQALRD
RLA
>Mature_163_residues
MFSLEIVTLARLLIDEARQRSLRIVTAESCTGGLVAGAICSIAGASDVFERGFVTYSNRAKQELLGVPGDLIADLGAVSE
PVARMMAEGALEASNAHLAVAITGVAGPGGGTPMKPVGTVHIATARSNERIMHRQELFAFETREEIQLAAVQAALQALRD
RLA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=162, Percent_Identity=45.679012345679, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787818, Length=126, Percent_Identity=40.4761904761905, Blast_Score=91, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 17141; Mature: 17141

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLEIVTLARLLIDEARQRSLRIVTAESCTGGLVAGAICSIAGASDVFERGFVTYSNRA
CCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCHHHHHHCCCEEECCHH
KQELLGVPGDLIADLGAVSEPVARMMAEGALEASNAHLAVAITGVAGPGGGTPMKPVGTV
HHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEE
HIATARSNERIMHRQELFAFETREEIQLAAVQAALQALRDRLA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFSLEIVTLARLLIDEARQRSLRIVTAESCTGGLVAGAICSIAGASDVFERGFVTYSNRA
CCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCHHHHHHCCCEEECCHH
KQELLGVPGDLIADLGAVSEPVARMMAEGALEASNAHLAVAITGVAGPGGGTPMKPVGTV
HHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEE
HIATARSNERIMHRQELFAFETREEIQLAAVQAALQALRDRLA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA