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The map label for this gene is ntrY [H]

Identifier: 197105192

GI number: 197105192

Start: 1935680

End: 1937854

Strand: Reverse

Name: ntrY [H]

Synonym: PHZ_c1729

Alternate gene names: 197105192

Gene position: 1937854-1935680 (Counterclockwise)

Preceding gene: 197105193

Following gene: 197105191

Centisome position: 48.49

GC content: 72.74

Gene sequence:

>2175_bases
ATGCGCCGCACGCTGCAGTCCAAGGTGGTGCTCGGCGTCGGCTACGGGGTGGCCGTCGGCCTGACGGTGCTGGCCATCAT
CCTGGCCGCCTCGCCGCCGCAGACGGGGCCGCTGGGGCCCGCCAGCCGGCTGATCTTGACCCTGCTGGGCCTGAACCTGA
TCCTCATCCTGCTGCTGATCGCGGCGGTGGGCCTGAGGATCATGGAGCTGGTCCGGGCCCGCGCCGAGGACGCCGGGGCG
CGCCTGCACGTCCGCTTCGTCCGCCTGTTCGCCCTGGCGGCGGTCGTGCCGGCGGCCGTGGTGTTCATCTTCTACGGCGT
GCTGGTCAGCCGGGGCGTCGAGAACTGGTTCAGCGCGCGGGTCCAGACGGTCGTCGAGACCTCGGCCACCGTGCTTCGGA
CCTATGTGGACGAGCAGATCCAGTACATCCGCGACCACGTCACGCCGATGGCCGCCGACCTCAACCGCGAGGCCGACGCC
CTGCAGGAGAACCCCGGGCAGGTCAGCAGCTACCTGGGCGCGCTGGCGTCGTATCACGCGTTCTCGGCGGCCTATCTGGT
GGACGGCCGCGGCCGGGTGCTGGCCAGGGCCGAAAGCGACGAGGCGCCGCCCTTCACGCCGCCCTCGGCCGCCAGCTTCG
AAGCCGCCGACACCGGCGAGATCTACATTCCCGACTTCACCGGCGGCGACGTCATGCGGGCGGTCTACCGCCTGAACGCC
TACGAGGACCTCTACCTCTACATCGCCCGGCCGCTGCGGGAGGGGATCGTCGTCAACCTCCGCAACGCCGAGGGCTCGCT
CGTCTCGTACCGCGACGTGGCCCAGAACCGCGAGCGCATCCAGGCGATCTTCGTCCTGAGCTACGCCGAGACGGCGCTGC
TGGTGCTGGTTGGGGCGGTGTGGCTGGGGCTGGGCGCCGCCAACGCGCTGTCAGCGCCCATCGCCCGGCTGGTGCAGGCC
GCGGGACGGGTGGCCGGCGGCGACCTCAGCGCCCGGGTGGACGCCGAGTCCGACCCGGACGAGATCGCGGTGTTGTCCCG
CGCTTTCAACAGCATGACGCATGATCTTCAGGCCCAGCAGGAGGCGCTGAAGCGCGCCGGCGACGAGGCCGAGAGCCGGC
GCCAGTTCATCGAGACCGTGCTGGCGGAGGTGAGCGCCGGGGTGATCGGCCTGGACCGCAAGGGCCGCATCTCGGTGGCC
AACCGCCAGGCGGCGCTGCTGCTCGACCTGCCGGGCGACCACGGCCGGGGCCGCCGCCTCGCCGACGTGGCGCCCGAGTT
CGCCGAGCTCGCCGCCGGGGCGGGCCGGGGCGGCGAGGCCGAGGAGGAGATCGACGTCGTCCGCGGGCGCGAGAACCGCC
GGCTGCGCGTGCGCGCCAGCCAGAGCGAGGGCGGGCTCGTGCTGACTTTCGACGACATCACCCGCCTGGTCGCCGCCCAG
CGCAACGCCGCCTGGCGCGACGTGGCGCGGCGCATCGCCCACGAGATCAAGAACCCGCTGACCCCGATCCAGCTCTCGGC
CGAACGCCTGCGGAAGAAGTACCGCAAGGACATCGCCGACGCCGAGCTCGAGACCTTCGACCGCTGCACCGACACCATCG
TGCGGCAGGTGGGCGACATCGGCCGCATGGTGGACGAGTTCTCGGCCTTCGCCCGGATGCCGGCGCCGAAGTTCGCCAAG
GCCGACGCCAGCGAGCTGCTGCGGGCCGCCGTGTTCGCCCAGCGGGTGGCGAGCCCCGACATCTCGGTCGAGCTGGAGGA
GCCGGCGCCGGACGCCATGCTCCTGGCGGACAGCCGCATGATCGCCCAGGCGCTGACCAACGTACTCAAGAACGCGGCCG
AGGCGGTGGAGGCCCGGCGGGCCCGGACGCCGAAGCTCAAGGGCCGGATCGTCGCGCGCCTGGCGGCCGACGACGGGCAG
GTGGCGTTCGAGGTCGAGGACAACGGCGTCGGCCTGCCGGCCAAGGACCGCGACCGCCTGACCGAACCCTATGTGACGAC
GCGGGAGAAGGGCACGGGCCTTGGCCTCGCGATCGTGAAGCGAATCCTGGAAGACCACGGCGGCGAGCTGGAGCTCGCCG
ACGCGCGGAGCGGGCAGGGGGCCCTGGCCACCCTTCGCCTGCCGGCGGCGAGCGCCGCGCGCGTCGAGGCTACGGCCGTC
GCCGCGACGACGTGA

Upstream 100 bases:

>100_bases
GGCGCAACATAGCTGTTGAGTTCGGAGCACAGTCCCTTAGGCTCCCGACGCAATGGCGTTGCCTATCAACCCCGCGTTCG
CGCCCCAGGCGCTGGCCTGG

Downstream 100 bases:

>100_bases
GAAGGCGGAAGGCATGGCTGCAGACGTTCTGGTGGTCGACGACGAGGTGGACATCCGCGAGCTGGTCGCGGGGATCCTCT
CGGACGAGGGTTATGCGGTC

Product: nitrogen regulation protein NtrY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 724

Protein sequence:

>724_residues
MRRTLQSKVVLGVGYGVAVGLTVLAIILAASPPQTGPLGPASRLILTLLGLNLILILLLIAAVGLRIMELVRARAEDAGA
RLHVRFVRLFALAAVVPAAVVFIFYGVLVSRGVENWFSARVQTVVETSATVLRTYVDEQIQYIRDHVTPMAADLNREADA
LQENPGQVSSYLGALASYHAFSAAYLVDGRGRVLARAESDEAPPFTPPSAASFEAADTGEIYIPDFTGGDVMRAVYRLNA
YEDLYLYIARPLREGIVVNLRNAEGSLVSYRDVAQNRERIQAIFVLSYAETALLVLVGAVWLGLGAANALSAPIARLVQA
AGRVAGGDLSARVDAESDPDEIAVLSRAFNSMTHDLQAQQEALKRAGDEAESRRQFIETVLAEVSAGVIGLDRKGRISVA
NRQAALLLDLPGDHGRGRRLADVAPEFAELAAGAGRGGEAEEEIDVVRGRENRRLRVRASQSEGGLVLTFDDITRLVAAQ
RNAAWRDVARRIAHEIKNPLTPIQLSAERLRKKYRKDIADAELETFDRCTDTIVRQVGDIGRMVDEFSAFARMPAPKFAK
ADASELLRAAVFAQRVASPDISVELEEPAPDAMLLADSRMIAQALTNVLKNAAEAVEARRARTPKLKGRIVARLAADDGQ
VAFEVEDNGVGLPAKDRDRLTEPYVTTREKGTGLGLAIVKRILEDHGGELELADARSGQGALATLRLPAASAARVEATAV
AATT

Sequences:

>Translated_724_residues
MRRTLQSKVVLGVGYGVAVGLTVLAIILAASPPQTGPLGPASRLILTLLGLNLILILLLIAAVGLRIMELVRARAEDAGA
RLHVRFVRLFALAAVVPAAVVFIFYGVLVSRGVENWFSARVQTVVETSATVLRTYVDEQIQYIRDHVTPMAADLNREADA
LQENPGQVSSYLGALASYHAFSAAYLVDGRGRVLARAESDEAPPFTPPSAASFEAADTGEIYIPDFTGGDVMRAVYRLNA
YEDLYLYIARPLREGIVVNLRNAEGSLVSYRDVAQNRERIQAIFVLSYAETALLVLVGAVWLGLGAANALSAPIARLVQA
AGRVAGGDLSARVDAESDPDEIAVLSRAFNSMTHDLQAQQEALKRAGDEAESRRQFIETVLAEVSAGVIGLDRKGRISVA
NRQAALLLDLPGDHGRGRRLADVAPEFAELAAGAGRGGEAEEEIDVVRGRENRRLRVRASQSEGGLVLTFDDITRLVAAQ
RNAAWRDVARRIAHEIKNPLTPIQLSAERLRKKYRKDIADAELETFDRCTDTIVRQVGDIGRMVDEFSAFARMPAPKFAK
ADASELLRAAVFAQRVASPDISVELEEPAPDAMLLADSRMIAQALTNVLKNAAEAVEARRARTPKLKGRIVARLAADDGQ
VAFEVEDNGVGLPAKDRDRLTEPYVTTREKGTGLGLAIVKRILEDHGGELELADARSGQGALATLRLPAASAARVEATAV
AATT
>Mature_724_residues
MRRTLQSKVVLGVGYGVAVGLTVLAIILAASPPQTGPLGPASRLILTLLGLNLILILLLIAAVGLRIMELVRARAEDAGA
RLHVRFVRLFALAAVVPAAVVFIFYGVLVSRGVENWFSARVQTVVETSATVLRTYVDEQIQYIRDHVTPMAADLNREADA
LQENPGQVSSYLGALASYHAFSAAYLVDGRGRVLARAESDEAPPFTPPSAASFEAADTGEIYIPDFTGGDVMRAVYRLNA
YEDLYLYIARPLREGIVVNLRNAEGSLVSYRDVAQNRERIQAIFVLSYAETALLVLVGAVWLGLGAANALSAPIARLVQA
AGRVAGGDLSARVDAESDPDEIAVLSRAFNSMTHDLQAQQEALKRAGDEAESRRQFIETVLAEVSAGVIGLDRKGRISVA
NRQAALLLDLPGDHGRGRRLADVAPEFAELAAGAGRGGEAEEEIDVVRGRENRRLRVRASQSEGGLVLTFDDITRLVAAQ
RNAAWRDVARRIAHEIKNPLTPIQLSAERLRKKYRKDIADAELETFDRCTDTIVRQVGDIGRMVDEFSAFARMPAPKFAK
ADASELLRAAVFAQRVASPDISVELEEPAPDAMLLADSRMIAQALTNVLKNAAEAVEARRARTPKLKGRIVARLAADDGQ
VAFEVEDNGVGLPAKDRDRLTEPYVTTREKGTGLGLAIVKRILEDHGGELELADARSGQGALATLRLPAASAARVEATAV
AATT

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=391, Percent_Identity=24.2966751918159, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1790300, Length=300, Percent_Identity=29.6666666666667, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1790436, Length=223, Percent_Identity=29.1479820627803, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1789808, Length=226, Percent_Identity=28.3185840707965, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI145693157, Length=235, Percent_Identity=24.2553191489362, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790861, Length=223, Percent_Identity=28.2511210762332, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 77900; Mature: 77900

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTLQSKVVLGVGYGVAVGLTVLAIILAASPPQTGPLGPASRLILTLLGLNLILILLLI
CCCCHHHCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AAVGLRIMELVRARAEDAGARLHVRFVRLFALAAVVPAAVVFIFYGVLVSRGVENWFSAR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQTVVETSATVLRTYVDEQIQYIRDHVTPMAADLNREADALQENPGQVSSYLGALASYHA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
FSAAYLVDGRGRVLARAESDEAPPFTPPSAASFEAADTGEIYIPDFTGGDVMRAVYRLNA
HHEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCC
YEDLYLYIARPLREGIVVNLRNAEGSLVSYRDVAQNRERIQAIFVLSYAETALLVLVGAV
HHHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGLGAANALSAPIARLVQAAGRVAGGDLSARVDAESDPDEIAVLSRAFNSMTHDLQAQQ
HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
EALKRAGDEAESRRQFIETVLAEVSAGVIGLDRKGRISVANRQAALLLDLPGDHGRGRRL
HHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEECCCEEEEEECCCCCCCCCCH
ADVAPEFAELAAGAGRGGEAEEEIDVVRGRENRRLRVRASQSEGGLVLTFDDITRLVAAQ
HHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHH
RNAAWRDVARRIAHEIKNPLTPIQLSAERLRKKYRKDIADAELETFDRCTDTIVRQVGDI
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRMVDEFSAFARMPAPKFAKADASELLRAAVFAQRVASPDISVELEEPAPDAMLLADSRM
HHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHH
IAQALTNVLKNAAEAVEARRARTPKLKGRIVARLAADDGQVAFEVEDNGVGLPAKDRDRL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHC
TEPYVTTREKGTGLGLAIVKRILEDHGGELELADARSGQGALATLRLPAASAARVEATAV
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHEE
AATT
EECC
>Mature Secondary Structure
MRRTLQSKVVLGVGYGVAVGLTVLAIILAASPPQTGPLGPASRLILTLLGLNLILILLLI
CCCCHHHCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AAVGLRIMELVRARAEDAGARLHVRFVRLFALAAVVPAAVVFIFYGVLVSRGVENWFSAR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQTVVETSATVLRTYVDEQIQYIRDHVTPMAADLNREADALQENPGQVSSYLGALASYHA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
FSAAYLVDGRGRVLARAESDEAPPFTPPSAASFEAADTGEIYIPDFTGGDVMRAVYRLNA
HHEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCC
YEDLYLYIARPLREGIVVNLRNAEGSLVSYRDVAQNRERIQAIFVLSYAETALLVLVGAV
HHHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLGLGAANALSAPIARLVQAAGRVAGGDLSARVDAESDPDEIAVLSRAFNSMTHDLQAQQ
HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
EALKRAGDEAESRRQFIETVLAEVSAGVIGLDRKGRISVANRQAALLLDLPGDHGRGRRL
HHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEECCCEEEEEECCCCCCCCCCH
ADVAPEFAELAAGAGRGGEAEEEIDVVRGRENRRLRVRASQSEGGLVLTFDDITRLVAAQ
HHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHH
RNAAWRDVARRIAHEIKNPLTPIQLSAERLRKKYRKDIADAELETFDRCTDTIVRQVGDI
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRMVDEFSAFARMPAPKFAKADASELLRAAVFAQRVASPDISVELEEPAPDAMLLADSRM
HHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHH
IAQALTNVLKNAAEAVEARRARTPKLKGRIVARLAADDGQVAFEVEDNGVGLPAKDRDRL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHC
TEPYVTTREKGTGLGLAIVKRILEDHGGELELADARSGQGALATLRLPAASAARVEATAV
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHEE
AATT
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]