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The map label for this gene is nusB [H]

Identifier: 197105131

GI number: 197105131

Start: 1874005

End: 1874454

Strand: Reverse

Name: nusB [H]

Synonym: PHZ_c1668

Alternate gene names: 197105131

Gene position: 1874454-1874005 (Counterclockwise)

Preceding gene: 197105132

Following gene: 197105130

Centisome position: 46.91

GC content: 70.89

Gene sequence:

>450_bases
ATGAGCGCGGCCCGGGCATCCCGATCGGTCGCGCGCCTGGCGGCCGTCCAGGCGCTGTACCAGATGGAGGTCTCCTCCAC
CGGCGTGGAGGCGGTCATCCGCGAGTTCTCGGATCATCGCTTCGACCGCGACGTCGAGGGCGAGACCCTGGCCTCGGCCG
ACGAGGCGTTCTTCGCCGACCTGGTGCGCGGCGTGGTGCGCGAGCAGAAGCCGATCGACGCGGCCATCGTGAAGCGCCTG
GCCCAGGGCTGGCGACTGGAGCGGCTGGACGCCACCGTGCGGGCGATCCTGCGCGCCGGGGCGTTCGAACTGATGCACCG
CTCCGACGTGCCCACCGAGGTGGCGATCGACGAGTACGTCGAGCTGACGAAGAGCTTCTTCGAGGGACCCGAACCGGGCT
TCGTGAACGGGGCCCTGGACGGCGTGGCGCGGGATGTCCGGCCTGGATGA

Upstream 100 bases:

>100_bases
GGGCGCGGGCCCGGATCAGCGAAGGCGACAAGGGCGGCGGCGCGGCCCGCGCGGCCCTGGCGATGGTGGCGCTGAAGCAG
CAGCTGACGGCGGGCGGGCG

Downstream 100 bases:

>100_bases
GTTCGGCGAGATCGCAAGGCTCTTCCGCCCGCTGACCCGCGGGGCTCCCGGCGCGTTCGAGCTCAAGGACGACGCCGCCG
TCATTCCCTCCCGGCCGGGG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSAARASRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGETLASADEAFFADLVRGVVREQKPIDAAIVKRL
AQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELTKSFFEGPEPGFVNGALDGVARDVRPG

Sequences:

>Translated_149_residues
MSAARASRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGETLASADEAFFADLVRGVVREQKPIDAAIVKRL
AQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELTKSFFEGPEPGFVNGALDGVARDVRPG
>Mature_148_residues
SAARASRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGETLASADEAFFADLVRGVVREQKPIDAAIVKRLA
QGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELTKSFFEGPEPGFVNGALDGVARDVRPG

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=136, Percent_Identity=36.0294117647059, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16365; Mature: 16233

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAARASRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGETLASADEAFFAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LVRGVVREQKPIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYV
HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ELTKSFFEGPEPGFVNGALDGVARDVRPG
HHHHHHHCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAARASRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGETLASADEAFFAD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LVRGVVREQKPIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYV
HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ELTKSFFEGPEPGFVNGALDGVARDVRPG
HHHHHHHCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA