| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is 197105129
Identifier: 197105129
GI number: 197105129
Start: 1872123
End: 1873058
Strand: Direct
Name: 197105129
Synonym: PHZ_c1666
Alternate gene names: NA
Gene position: 1872123-1873058 (Clockwise)
Preceding gene: 197105126
Following gene: 197105135
Centisome position: 46.85
GC content: 70.3
Gene sequence:
>936_bases ATGTCTCCGACCAGACGCCAGGCCGCCATCGGTCTCCTGACCGCCGCCGCGGCGCCCGGGCTCGCCCGCGCTCAGGAGCC GCCGCCGCCGGAGATCCCGGACGTCGACGAGGAGCCCACCAAGCTCGACACCGTCGCGGGGCGCGACACCCACATGATGG CGCCGGTGATCGTCAACGGCCGCGGGCCCTACCAATTCCTGCTCGACACGGGCGCCAACGTCAGCTGCGTCTCGCACCAT CTGGTCGAAGAACTGGCGCTGACCCCTGGCCCGCCCGCCCGGGTCCACACCATTGTCGGCGTGCGCGAGCGCCCCAGCTT CTTCATCGACGACCTGCAGGTCGGCAAGCGCAACCGCAAGCGCGTCCAGGCCCCTGCCCTGCCCTTCAAGGACCCGGCGG TGCACGGCGTCCTGGGGATCGACTGGCTGAAGGGCCAGCGCCTGGTGCTCGACTTCAAGAAGAACGCCATCGAGATCACC AAGTCGAAGTCCGACCACGCCCACCCGGGGCGGGTCGTGGTGGTCCCGGCCCGGCGGCGGCTGGGCCAGCTGACCATCGT CGACGCCGACCTGAACGGCACGCCGATCAGCGCGATGATCGACTCCGGCGCCGAGGGCACGCTCTGCAACGGCCCGCTGC GGGACCTCATCCGCGCGTCCGAGCGGCGCCGCGGCAAGGTGGACCCGCCGCAGATCGTCCGGATGGAGACCCTGGCCGGC GAGGTGTTCCGCGGCGAAGGCGTCTTCCTGCCGTTCCTGCGCCTGGGCGGCCTGCACCTGGGCAACGTGCCGGTGACCTA CGCGGACATGCACGTCTTCAAGATCTGGGGCCTTGAGGACAAGCCGGCGCTGGTGCTCGGCATGGACCTCCTGATGCAGT TCGAGCAGGTGGCGTTGGACTTCGGCCGGTCCACCGTGCGCTTCGAGTACATCTAG
Upstream 100 bases:
>100_bases ATTCGTTGAATCATCCTTTCAGGCTCCACCGCTCATGGGCGCCTTCGGTGAACGGTGGTATGATTTTCAACAAGAAGATG TTGGGAGGAGGTCCGGAGCC
Downstream 100 bases:
>100_bases CCCCGCGCGGCCTCAGCCGTGCCGCCAGCCCCCGGCTCCGGCCTCCAGTGTGCGGCCCAGCGCGCGGACCTCCACGCCCG CCCCCTCCGAAACCCTGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase Aspartic
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MSPTRRQAAIGLLTAAAAPGLARAQEPPPPEIPDVDEEPTKLDTVAGRDTHMMAPVIVNGRGPYQFLLDTGANVSCVSHH LVEELALTPGPPARVHTIVGVRERPSFFIDDLQVGKRNRKRVQAPALPFKDPAVHGVLGIDWLKGQRLVLDFKKNAIEIT KSKSDHAHPGRVVVVPARRRLGQLTIVDADLNGTPISAMIDSGAEGTLCNGPLRDLIRASERRRGKVDPPQIVRMETLAG EVFRGEGVFLPFLRLGGLHLGNVPVTYADMHVFKIWGLEDKPALVLGMDLLMQFEQVALDFGRSTVRFEYI
Sequences:
>Translated_311_residues MSPTRRQAAIGLLTAAAAPGLARAQEPPPPEIPDVDEEPTKLDTVAGRDTHMMAPVIVNGRGPYQFLLDTGANVSCVSHH LVEELALTPGPPARVHTIVGVRERPSFFIDDLQVGKRNRKRVQAPALPFKDPAVHGVLGIDWLKGQRLVLDFKKNAIEIT KSKSDHAHPGRVVVVPARRRLGQLTIVDADLNGTPISAMIDSGAEGTLCNGPLRDLIRASERRRGKVDPPQIVRMETLAG EVFRGEGVFLPFLRLGGLHLGNVPVTYADMHVFKIWGLEDKPALVLGMDLLMQFEQVALDFGRSTVRFEYI >Mature_310_residues SPTRRQAAIGLLTAAAAPGLARAQEPPPPEIPDVDEEPTKLDTVAGRDTHMMAPVIVNGRGPYQFLLDTGANVSCVSHHL VEELALTPGPPARVHTIVGVRERPSFFIDDLQVGKRNRKRVQAPALPFKDPAVHGVLGIDWLKGQRLVLDFKKNAIEITK SKSDHAHPGRVVVVPARRRLGQLTIVDADLNGTPISAMIDSGAEGTLCNGPLRDLIRASERRRGKVDPPQIVRMETLAGE VFRGEGVFLPFLRLGGLHLGNVPVTYADMHVFKIWGLEDKPALVLGMDLLMQFEQVALDFGRSTVRFEYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34018; Mature: 33887
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPTRRQAAIGLLTAAAAPGLARAQEPPPPEIPDVDEEPTKLDTVAGRDTHMMAPVIVNG CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEECC RGPYQFLLDTGANVSCVSHHLVEELALTPGPPARVHTIVGVRERPSFFIDDLQVGKRNRK CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEHHHHHCCCCHH RVQAPALPFKDPAVHGVLGIDWLKGQRLVLDFKKNAIEITKSKSDHAHPGRVVVVPARRR HCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCHH LGQLTIVDADLNGTPISAMIDSGAEGTLCNGPLRDLIRASERRRGKVDPPQIVRMETLAG CCEEEEEECCCCCCCHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEHHHHHC EVFRGEGVFLPFLRLGGLHLGNVPVTYADMHVFKIWGLEDKPALVLGMDLLMQFEQVALD CEECCCCCEEEHHHHCCEEECCCCEEEECEEEEEEECCCCCCEEEEHHHHHHHHHHHHHH FGRSTVRFEYI CCCCEEEEEEC >Mature Secondary Structure SPTRRQAAIGLLTAAAAPGLARAQEPPPPEIPDVDEEPTKLDTVAGRDTHMMAPVIVNG CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEECC RGPYQFLLDTGANVSCVSHHLVEELALTPGPPARVHTIVGVRERPSFFIDDLQVGKRNRK CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEHHHHHCCCCHH RVQAPALPFKDPAVHGVLGIDWLKGQRLVLDFKKNAIEITKSKSDHAHPGRVVVVPARRR HCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCHH LGQLTIVDADLNGTPISAMIDSGAEGTLCNGPLRDLIRASERRRGKVDPPQIVRMETLAG CCEEEEEECCCCCCCHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEHHHHHC EVFRGEGVFLPFLRLGGLHLGNVPVTYADMHVFKIWGLEDKPALVLGMDLLMQFEQVALD CEECCCCCEEEHHHHCCEEECCCCEEEECEEEEEEECCCCCCEEEEHHHHHHHHHHHHHH FGRSTVRFEYI CCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA