| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is gmk [H]
Identifier: 197105026
GI number: 197105026
Start: 1764523
End: 1765188
Strand: Direct
Name: gmk [H]
Synonym: PHZ_c1563
Alternate gene names: 197105026
Gene position: 1764523-1765188 (Clockwise)
Preceding gene: 197105025
Following gene: 197105027
Centisome position: 44.15
GC content: 70.27
Gene sequence:
>666_bases GTGAGCCCGCATGACGAACACGCCCGGCCCTGGGAGACCGTCCGCCGCGGCCTGCTGCTGCTGATCTCGAGCCCCGCGGG GGCGGGCAAGACCTCGCTGTCGCGCCGGCTCGTGGCGGACCACTCGGACCTGACGCTGTCGATCTCGGCGACCACCCGCG ATCCGCGGCCGGGCGAGGAGGAAGGGCGGGAGTACTTCTTCAAGACCCGCGCCGAGTTCGAGGCGATGATCGAGGCGGGC GAGTTCCTGGAGTGGGCGACCGTCAACGGCAACTACTACGGCACCCCGAAAACGCCCGTGATCGAGGCGCTGGAAGGCGG CCACGACGTGCTGTTCGACATCGACTGGCAGGGCGCGCGGCAGATCGCCGAGAAGCAGCCCGACGACAGCGTGCGGGTGT TCATCCTGCCGCCGGTGTGGAGCGACCTGGAGCGGCGCCTGCGGGCCCGGGCCCAGGACAGCGAGGAGATCATCGACGCC CGGCTGCGGCTGGGGCGCGAGGAGATCGCCCACTGGACCGAGTACGACTACGTCATCGTCAACAAGAACTTCGACCGCGC CTACGCCGACCTCGGCCACATCTACCGCGCCGAACGGATGAAGCCCGGCCGCAACCCGTGGCTGCCCGAGTTCGTCGACG GGCTGCTGGAGGACGCGGCGGGGTAG
Upstream 100 bases:
>100_bases ATCGGGGCGCGGGGTGTGCCAGAGAGGCGCGCGTTCGTGTGGTTCGTGTGGTGCGTGGACGACGTCCGCGCCGCGCGTGC GATTGGAGGATGGACCACTG
Downstream 100 bases:
>100_bases GGGGGGCTTCGACAGCTCACATCGCGACAAACAAGGGCTGTGCCCCCAGGCGCTCTCGGATGTTAATGCGCCCCGCGCCG CGAAGGCGGCCGATGCCGCG
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase [H]
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSPHDEHARPWETVRRGLLLLISSPAGAGKTSLSRRLVADHSDLTLSISATTRDPRPGEEEGREYFFKTRAEFEAMIEAG EFLEWATVNGNYYGTPKTPVIEALEGGHDVLFDIDWQGARQIAEKQPDDSVRVFILPPVWSDLERRLRARAQDSEEIIDA RLRLGREEIAHWTEYDYVIVNKNFDRAYADLGHIYRAERMKPGRNPWLPEFVDGLLEDAAG
Sequences:
>Translated_221_residues MSPHDEHARPWETVRRGLLLLISSPAGAGKTSLSRRLVADHSDLTLSISATTRDPRPGEEEGREYFFKTRAEFEAMIEAG EFLEWATVNGNYYGTPKTPVIEALEGGHDVLFDIDWQGARQIAEKQPDDSVRVFILPPVWSDLERRLRARAQDSEEIIDA RLRLGREEIAHWTEYDYVIVNKNFDRAYADLGHIYRAERMKPGRNPWLPEFVDGLLEDAAG >Mature_220_residues SPHDEHARPWETVRRGLLLLISSPAGAGKTSLSRRLVADHSDLTLSISATTRDPRPGEEEGREYFFKTRAEFEAMIEAGE FLEWATVNGNYYGTPKTPVIEALEGGHDVLFDIDWQGARQIAEKQPDDSVRVFILPPVWSDLERRLRARAQDSEEIIDAR LRLGREEIAHWTEYDYVIVNKNFDRAYADLGHIYRAERMKPGRNPWLPEFVDGLLEDAAG
Specific function: Essential for recycling GMP and indirectly, cGMP [H]
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain [H]
Homologues:
Organism=Homo sapiens, GI226874831, Length=191, Percent_Identity=38.2198952879581, Blast_Score=126, Evalue=1e-29, Organism=Homo sapiens, GI226874833, Length=191, Percent_Identity=38.2198952879581, Blast_Score=126, Evalue=1e-29, Organism=Homo sapiens, GI4504221, Length=191, Percent_Identity=38.2198952879581, Blast_Score=126, Evalue=1e-29, Organism=Homo sapiens, GI21361598, Length=207, Percent_Identity=28.9855072463768, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI38570142, Length=200, Percent_Identity=28, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI52630447, Length=206, Percent_Identity=29.126213592233, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4505237, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI262118255, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI262118263, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI262118259, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=3e-12, Organism=Escherichia coli, GI1790080, Length=192, Percent_Identity=48.9583333333333, Blast_Score=183, Evalue=7e-48, Organism=Caenorhabditis elegans, GI193203132, Length=182, Percent_Identity=36.8131868131868, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17508835, Length=182, Percent_Identity=36.8131868131868, Blast_Score=124, Evalue=3e-29, Organism=Saccharomyces cerevisiae, GI6320662, Length=183, Percent_Identity=38.2513661202186, Blast_Score=139, Evalue=5e-34, Organism=Drosophila melanogaster, GI21356141, Length=177, Percent_Identity=38.9830508474576, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI161077626, Length=210, Percent_Identity=28.0952380952381, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007136, Length=203, Percent_Identity=29.064039408867, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI85724806, Length=203, Percent_Identity=29.064039408867, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI45554489, Length=203, Percent_Identity=29.064039408867, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640542, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI45554481, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221330166, Length=145, Percent_Identity=32.4137931034483, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI221330162, Length=147, Percent_Identity=32.6530612244898, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI221330164, Length=147, Percent_Identity=32.6530612244898, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 [H]
Pfam domain/function: PF00625 Guanylate_kin [H]
EC number: =2.7.4.8 [H]
Molecular weight: Translated: 25234; Mature: 25103
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: PS00856 GUANYLATE_KINASE_1 ; PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPHDEHARPWETVRRGLLLLISSPAGAGKTSLSRRLVADHSDLTLSISATTRDPRPGEE CCCCCCCCCCHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCHH EGREYFFKTRAEFEAMIEAGEFLEWATVNGNYYGTPKTPVIEALEGGHDVLFDIDWQGAR HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCHHHHHHCCCCEEEEEECCHHHH QIAEKQPDDSVRVFILPPVWSDLERRLRARAQDSEEIIDARLRLGREEIAHWTEYDYVIV HHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCEEEE NKNFDRAYADLGHIYRAERMKPGRNPWLPEFVDGLLEDAAG ECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure SPHDEHARPWETVRRGLLLLISSPAGAGKTSLSRRLVADHSDLTLSISATTRDPRPGEE CCCCCCCCCHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCHH EGREYFFKTRAEFEAMIEAGEFLEWATVNGNYYGTPKTPVIEALEGGHDVLFDIDWQGAR HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCHHHHHHCCCCEEEEEECCHHHH QIAEKQPDDSVRVFILPPVWSDLERRLRARAQDSEEIIDARLRLGREEIAHWTEYDYVIV HHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCEEEE NKNFDRAYADLGHIYRAERMKPGRNPWLPEFVDGLLEDAAG ECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]