BacMap

Definition	Phenylobacterium zucineum HLK1, complete genome.
Accession	NC_011144
Length	3,996,255

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The map label for this gene is yciK [H]

Identifier: 197105000

GI number: 197105000

Start: 1737736

End: 1738482

Strand: Reverse

Name: yciK [H]

Synonym: PHZ_c1537

Alternate gene names: 197105000

Gene position: 1738482-1737736 (Counterclockwise)

Preceding gene: 197105001

Following gene: 197104989

Centisome position: 43.5

GC content: 71.89

Gene sequence:

>747_bases
ATGCCCGACCTGCCCCTTACCGACCGTATCGCCCTCGTCACCGGCGCCAGCCGCGGCATCGGCCGCGCCGCCGCCCTCGC
CCTGGCCAAGGCCGGCGCCCACGTGGTCGCCGTCGCCCGCACCCAGGGCGGTCTCGAGGAGCTGGACGACGAGATCCGCG
CCGCCACTGGCAAGTCCGCCACCCTCGTGCCGATGGACATCGCCGAGGAAGGCGCGCTGGACCAGCTCGGCCTGGCCGTC
CACCAGCGGTTCGGCCGCCTGGACATCCTCGTCCACGCCGCCGCGATCCTGGGGCCCATCACGCCGGTGTCGCACATCGA
GCCCAAGCACTGGGCGCGCGTGATGGACGTGAACCTCACCGCCTCGTATCGCCTGATCCGCAGCGCAGAACCCCTCCTGC
GCGCCTCCGAGCGCCCCCGGGCGATCTTCCTGACCACCAGCCGCGCGCACAATCCGAAGGCTTTCTGGGGCCCCTACGGA
GCCTCCAAGGCCGCGCTGGAGAACTTGGTCCGCACCTGGGCCGACGAGCTGGAGCAGACCAAGATCCGGGCCGTCCTGCT
CGAGCCCGGCGCGATGCGCACGAAGATGCGCGCCGAGGCCATGCCGGGCGAGGATCCGATGAGCCTGCCCGACCCCTCCG
AGATCGGGCCGCTGGTGGTGGAGCTCGCCCAGGCCGACCTGGGCCTGCCCACGTCTAACGTGGTGTTCGCCGACTGGAAG
AGGGCCGGGAAGCTCGCTTCGGCTTGA

Upstream 100 bases:

>100_bases
CTGATCTTCCACCAGATGCAGCTGATGGCCTGCGCCGCCATGGCCCAGCGCTACGCGCGGCGGCCTGACATCGAGGCCGT
AAGCGGCTAGAGAGCCGCCC

Downstream 100 bases:

>100_bases
CGCCGGGCCGGGCCAGCTTGGCCGCCCGTCCCCGGGTCGGCGTGCGCTTGGCCTTGGCCGGGCCTTTCGGCTTCGGCGGA
CCGCCCTCCCCCTTCGGCTT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MPDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSATLVPMDIAEEGALDQLGLAV
HQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLTASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYG
ASKAALENLVRTWADELEQTKIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK
RAGKLASA

Sequences:

>Translated_248_residues
MPDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSATLVPMDIAEEGALDQLGLAV
HQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLTASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYG
ASKAALENLVRTWADELEQTKIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK
RAGKLASA
>Mature_247_residues
PDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSATLVPMDIAEEGALDQLGLAVH
QRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLTASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYGA
SKAALENLVRTWADELEQTKIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWKR
AGKLASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=207, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI32483357, Length=196, Percent_Identity=30.1020408163265, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI7657478, Length=212, Percent_Identity=27.3584905660377, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI20149619, Length=248, Percent_Identity=28.2258064516129, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=29.3193717277487, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI209862901, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI19923983, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI4504505, Length=230, Percent_Identity=28.695652173913, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI19923817, Length=200, Percent_Identity=26.5, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI126723750, Length=216, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI7705925, Length=197, Percent_Identity=32.48730964467, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787526, Length=223, Percent_Identity=37.6681614349776, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI87082160, Length=199, Percent_Identity=30.1507537688442, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=31.1475409836066, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=29.8969072164948, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786812, Length=194, Percent_Identity=28.8659793814433, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367175, Length=225, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=25.414364640884, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=27.1604938271605, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082100, Length=240, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790717, Length=201, Percent_Identity=25.8706467661692, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787905, Length=192, Percent_Identity=30.2083333333333, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=29.7560975609756, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=229, Percent_Identity=28.82096069869, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=208, Percent_Identity=34.1346153846154, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=213, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=33.160621761658, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=210, Percent_Identity=27.1428571428571, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=215, Percent_Identity=28.3720930232558, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=245, Percent_Identity=28.1632653061224, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=203, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=226, Percent_Identity=30.5309734513274, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=32.8282828282828, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=231, Percent_Identity=27.7056277056277, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=232, Percent_Identity=27.1551724137931, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=29.7029702970297, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=208, Percent_Identity=27.8846153846154, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=144, Percent_Identity=28.4722222222222, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=31.0679611650485, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6322227, Length=202, Percent_Identity=32.6732673267327, Blast_Score=96, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6322226, Length=203, Percent_Identity=30.5418719211823, Blast_Score=94, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6322861, Length=251, Percent_Identity=30.6772908366534, Blast_Score=83, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=30.9917355371901, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=32.6530612244898, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=199, Percent_Identity=30.6532663316583, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=30.1507537688442, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI23397609, Length=196, Percent_Identity=30.1020408163265, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26490; Mature: 26359

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSA
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
TLVPMDIAEEGALDQLGLAVHQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLT
EEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEECCH
ASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYGASKAALENLVRTWADELEQT
HHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH
KIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK
HEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHH
RAGKLASA
HCCCCCCC
>Mature Secondary Structure 
PDLPLTDRIALVTGASRGIGRAAALALAKAGAHVVAVARTQGGLEELDDEIRAATGKSA
CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
TLVPMDIAEEGALDQLGLAVHQRFGRLDILVHAAAILGPITPVSHIEPKHWARVMDVNLT
EEEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEECCH
ASYRLIRSAEPLLRASERPRAIFLTTSRAHNPKAFWGPYGASKAALENLVRTWADELEQT
HHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH
KIRAVLLEPGAMRTKMRAEAMPGEDPMSLPDPSEIGPLVVELAQADLGLPTSNVVFADWK
HEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECHH
RAGKLASA
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]