| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is pcoA [H]
Identifier: 197104941
GI number: 197104941
Start: 1677609
End: 1679543
Strand: Direct
Name: pcoA [H]
Synonym: PHZ_c1476
Alternate gene names: 197104941
Gene position: 1677609-1679543 (Clockwise)
Preceding gene: 197104940
Following gene: 197104942
Centisome position: 41.98
GC content: 67.65
Gene sequence:
>1935_bases ATGCGACGCCGCCGCGACATCGACCTGGATCGCCGCAAGGTCCTGAAGGGGACCGCCGTCCTTGGGGGCGGCGCCGCGCT GAGCGCGCTGCTGCCGGCATGGGCGTGGAGCGCGAGCCCTGGCGTCGCTTCGACCTTGCCGACGCTTTCGGGCGAGGAGA TCAAGCTCACGATCGGCCACACGCCCATCTCCATCGACGGCAAGCGCAGCCACGCCGTGACCATCAACGGCACGGTGCCG GGCCCGCTGATCCGTCTGAAGGAGGGCCAGAACGTCCGCATCGCGGTCACCAACACGTTGGACGAAGACACCTCGATCCA CTGGCACGGCCTGCTCGTGCCCTTCCAGATGGACGGCGTGCCGGGGGTCAGCTTCCCGGGCATCAAGCCGGGCGAGACCT TCGTCTACGAGTTCCCGGTCATCCAGTCGGGCACCTACTGGTACCACAGCCACTCCAGCCTGCAGGAGGCGGAGGGGCAC TACGCGCCGATCGTCATCGAGCCGGCCAAGCCCGATCCGGTCGCCTACGATCGGGAGCATGTCATCGTGCTCTCCGACCA CAGCGAGATGCACCCGCACCTGATCTTCAAGCGCCTGAAGCAGATGGGCGGCGTTTTCAATTACCAGCGTCAGACCTTGG CGGGCCTTCTCGCGGGCAAGGACCAGACCCTTCAGGAGCGGATCGAGTGGGCCAAGATGCTCATGGATCCCACCGACATC TCCGACGTCACGGGCGCCGTGATGACCTTCCTCGTGAACGGCCACGGCCCGAAGGACAACTGGACGGCGCTGTTCACGCC CGGCGAGCGCGTGCGCCTGCGCTTCGTCAACGCTGCGGCCCAGATGATCTTCAACGTCCGCATCCCCGGCCTGAAGCTCA CGGTGGTCGCCGCCGACGGCCAAAACGTACGCCCCGTCGAGGTGGACGAGTTCCAGATCGGCAACGCCGAGACCTACGAC ATCATCGTCCAGCCCACAGAGGACCGGGCCTACACGCTCGTCTCTGAAGCTATCGACCGCTCCGGCATGGGCCGCGCGAC GCTCGCCCCGCGGCCGGGCATGAGCGCCCCCGTGCCCCCACTGCGGGAGCGGCCGATCCTGACCATGAAGGACATGGGCA TGGACATGTCGGCGCACGGGGGACACGGCGCCATGGCCGGCATGGACCACGCCAACATGCCGGGAATGACGCCGGCGCCC GCCGCGGCCGACCACGCCAACATGCCGGGAATGACGCCGGCGCCCGCCGCGGCCGACCACGCCAACATGCCCGGGATGGA TCACGCCGCCATGACGGCGATGTCCACTTCGCCCCCGCCTGGGATGGCGCCGCCGCGGGCGAGGGGCTCGGACGTCATGG GCGACATGGCGGGCATGGACATGAACATGCTGGACTGGTCGAAGGCACCCCAGATCAAGAAGGGGCCGGGCGTGCAGATG ATCTCGCCCATGCCGATGGATCGCACCGGCGAGGCTGGCCTGGGCCTCGAAAGCGTGGGGCACCGGGTCTTGGTCTACAA GGACCTGGTGGCCCTGGAGCCGAACCCAGACCCGCGGGCGCCGGAGCGGGCGGTGGAAATCCGCCTGACCGGCAACATGG AGCGCTTCATGTGGGGCTTCGACGGCTGGAAGTTCAGCGAAGGGCCGCCGCCCTATTCGTTCCGGACAGGCGAGCGCGTG CGCATCACCCTGGTGAACGACTCGATGATGACCCACCCGATCCACCTGCACGGGCACTTCTTCGAACTCGTGCATGGGCC TGTCGGTCATCTGCCCCGCAAGCACACGGTCAATGTGGCGCCCGGCGGGAAGGTGAGCTTCGACATCACGGCGGAGGCCG GCGACTGGGCCTTCCACTGCCACATGCTCTACCACATGCACGCGGGCATGTTCCAAGTGTTCAAGGTGCGCCCGATGCAA GGAGCGGCGGCATGA
Upstream 100 bases:
>100_bases ATAGACGCCTGCGCTGCGTATACGTCATCGCAGGCCCTCCCTTGACCCTCCCTACGTGGGAAGCGCTATCCCTCCGCCAA TGAGGACAGGACAACTTCGT
Downstream 100 bases:
>100_bases TGCGCCCGGCCCTAATCGCCCTGCTTCCCGCCGCCATCGCGGCGCCCGCGCTGGCGCAGGACCCCCACGCGGGCCACCAG ATGCCGGCCGCCCCTGCGTC
Product: copper-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MRRRRDIDLDRRKVLKGTAVLGGGAALSALLPAWAWSASPGVASTLPTLSGEEIKLTIGHTPISIDGKRSHAVTINGTVP GPLIRLKEGQNVRIAVTNTLDEDTSIHWHGLLVPFQMDGVPGVSFPGIKPGETFVYEFPVIQSGTYWYHSHSSLQEAEGH YAPIVIEPAKPDPVAYDREHVIVLSDHSEMHPHLIFKRLKQMGGVFNYQRQTLAGLLAGKDQTLQERIEWAKMLMDPTDI SDVTGAVMTFLVNGHGPKDNWTALFTPGERVRLRFVNAAAQMIFNVRIPGLKLTVVAADGQNVRPVEVDEFQIGNAETYD IIVQPTEDRAYTLVSEAIDRSGMGRATLAPRPGMSAPVPPLRERPILTMKDMGMDMSAHGGHGAMAGMDHANMPGMTPAP AAADHANMPGMTPAPAAADHANMPGMDHAAMTAMSTSPPPGMAPPRARGSDVMGDMAGMDMNMLDWSKAPQIKKGPGVQM ISPMPMDRTGEAGLGLESVGHRVLVYKDLVALEPNPDPRAPERAVEIRLTGNMERFMWGFDGWKFSEGPPPYSFRTGERV RITLVNDSMMTHPIHLHGHFFELVHGPVGHLPRKHTVNVAPGGKVSFDITAEAGDWAFHCHMLYHMHAGMFQVFKVRPMQ GAAA
Sequences:
>Translated_644_residues MRRRRDIDLDRRKVLKGTAVLGGGAALSALLPAWAWSASPGVASTLPTLSGEEIKLTIGHTPISIDGKRSHAVTINGTVP GPLIRLKEGQNVRIAVTNTLDEDTSIHWHGLLVPFQMDGVPGVSFPGIKPGETFVYEFPVIQSGTYWYHSHSSLQEAEGH YAPIVIEPAKPDPVAYDREHVIVLSDHSEMHPHLIFKRLKQMGGVFNYQRQTLAGLLAGKDQTLQERIEWAKMLMDPTDI SDVTGAVMTFLVNGHGPKDNWTALFTPGERVRLRFVNAAAQMIFNVRIPGLKLTVVAADGQNVRPVEVDEFQIGNAETYD IIVQPTEDRAYTLVSEAIDRSGMGRATLAPRPGMSAPVPPLRERPILTMKDMGMDMSAHGGHGAMAGMDHANMPGMTPAP AAADHANMPGMTPAPAAADHANMPGMDHAAMTAMSTSPPPGMAPPRARGSDVMGDMAGMDMNMLDWSKAPQIKKGPGVQM ISPMPMDRTGEAGLGLESVGHRVLVYKDLVALEPNPDPRAPERAVEIRLTGNMERFMWGFDGWKFSEGPPPYSFRTGERV RITLVNDSMMTHPIHLHGHFFELVHGPVGHLPRKHTVNVAPGGKVSFDITAEAGDWAFHCHMLYHMHAGMFQVFKVRPMQ GAAA >Mature_644_residues MRRRRDIDLDRRKVLKGTAVLGGGAALSALLPAWAWSASPGVASTLPTLSGEEIKLTIGHTPISIDGKRSHAVTINGTVP GPLIRLKEGQNVRIAVTNTLDEDTSIHWHGLLVPFQMDGVPGVSFPGIKPGETFVYEFPVIQSGTYWYHSHSSLQEAEGH YAPIVIEPAKPDPVAYDREHVIVLSDHSEMHPHLIFKRLKQMGGVFNYQRQTLAGLLAGKDQTLQERIEWAKMLMDPTDI SDVTGAVMTFLVNGHGPKDNWTALFTPGERVRLRFVNAAAQMIFNVRIPGLKLTVVAADGQNVRPVEVDEFQIGNAETYD IIVQPTEDRAYTLVSEAIDRSGMGRATLAPRPGMSAPVPPLRERPILTMKDMGMDMSAHGGHGAMAGMDHANMPGMTPAP AAADHANMPGMTPAPAAADHANMPGMDHAAMTAMSTSPPPGMAPPRARGSDVMGDMAGMDMNMLDWSKAPQIKKGPGVQM ISPMPMDRTGEAGLGLESVGHRVLVYKDLVALEPNPDPRAPERAVEIRLTGNMERFMWGFDGWKFSEGPPPYSFRTGERV RITLVNDSMMTHPIHLHGHFFELVHGPVGHLPRKHTVNVAPGGKVSFDITAEAGDWAFHCHMLYHMHAGMFQVFKVRPMQ GAAA
Specific function: Required for the copper-inducible expression of copper resistance. May have oxidase activity [H]
COG id: COG2132
COG function: function code Q; Putative multicopper oxidases
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multicopper oxidase family. CopA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786314, Length=435, Percent_Identity=25.7471264367816, Blast_Score=100, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6320714, Length=306, Percent_Identity=25.1633986928105, Blast_Score=88, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6321067, Length=367, Percent_Identity=25.3405994550409, Blast_Score=86, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6323703, Length=152, Percent_Identity=37.5, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI18859919, Length=274, Percent_Identity=31.021897810219, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI24585842, Length=297, Percent_Identity=30.6397306397306, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI281360167, Length=297, Percent_Identity=30.6397306397306, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI221329998, Length=297, Percent_Identity=30.6397306397306, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI221330000, Length=297, Percent_Identity=30.6397306397306, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24650186, Length=278, Percent_Identity=25.5395683453237, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI28574104, Length=302, Percent_Identity=27.4834437086093, Blast_Score=87, Evalue=2e-17,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001117 - InterPro: IPR011706 - InterPro: IPR011707 - InterPro: IPR006376 - InterPro: IPR002355 - InterPro: IPR008972 - InterPro: IPR006311 [H]
Pfam domain/function: PF00394 Cu-oxidase; PF07731 Cu-oxidase_2; PF07732 Cu-oxidase_3 [H]
EC number: NA
Molecular weight: Translated: 70122; Mature: 70122
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00079 MULTICOPPER_OXIDASE1 ; PS00080 MULTICOPPER_OXIDASE2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 6.4 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 6.4 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRRDIDLDRRKVLKGTAVLGGGAALSALLPAWAWSASPGVASTLPTLSGEEIKLTIGH CCCCCCCCHHHHHHHHCEEEECCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEECC TPISIDGKRSHAVTINGTVPGPLIRLKEGQNVRIAVTNTLDEDTSIHWHGLLVPFQMDGV CEEEECCCCCEEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEEECCC PGVSFPGIKPGETFVYEFPVIQSGTYWYHSHSSLQEAEGHYAPIVIEPAKPDPVAYDREH CCCCCCCCCCCCEEEEEECEEECCEEEEECCCCHHHCCCCCCCEEEECCCCCCCCCCCCE VIVLSDHSEMHPHLIFKRLKQMGGVFNYQRQTLAGLLAGKDQTLQERIEWAKMLMDPTDI EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH SDVTGAVMTFLVNGHGPKDNWTALFTPGERVRLRFVNAAAQMIFNVRIPGLKLTVVAADG HHHHHHHHHEEECCCCCCCCCEEEECCCCEEEEEEEEHHEEEEEEEECCCEEEEEEEECC QNVRPVEVDEFQIGNAETYDIIVQPTEDRAYTLVSEAIDRSGMGRATLAPRPGMSAPVPP CCCCCEECCCEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC LRERPILTMKDMGMDMSAHGGHGAMAGMDHANMPGMTPAPAAADHANMPGMTPAPAAADH CCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANMPGMDHAAMTAMSTSPPPGMAPPRARGSDVMGDMAGMDMNMLDWSKAPQIKKGPGVQM CCCCCCCHHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCEE ISPMPMDRTGEAGLGLESVGHRVLVYKDLVALEPNPDPRAPERAVEIRLTGNMERFMWGF ECCCCCCCCCCCCCCHHHHCCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHEEEEC DGWKFSEGPPPYSFRTGERVRITLVNDSMMTHPIHLHGHFFELVHGPVGHLPRKHTVNVA CCEECCCCCCCCCCCCCCEEEEEEECCCCEECEEEECHHHHHHHCCCHHCCCCCCEEEEC PGGKVSFDITAEAGDWAFHCHMLYHMHAGMFQVFKVRPMQGAAA CCCEEEEEEEECCCCEEEEEHHHHHHHCCCEEEEEECCCCCCCC >Mature Secondary Structure MRRRRDIDLDRRKVLKGTAVLGGGAALSALLPAWAWSASPGVASTLPTLSGEEIKLTIGH CCCCCCCCHHHHHHHHCEEEECCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEECC TPISIDGKRSHAVTINGTVPGPLIRLKEGQNVRIAVTNTLDEDTSIHWHGLLVPFQMDGV CEEEECCCCCEEEEEECCCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEEECCC PGVSFPGIKPGETFVYEFPVIQSGTYWYHSHSSLQEAEGHYAPIVIEPAKPDPVAYDREH CCCCCCCCCCCCEEEEEECEEECCEEEEECCCCHHHCCCCCCCEEEECCCCCCCCCCCCE VIVLSDHSEMHPHLIFKRLKQMGGVFNYQRQTLAGLLAGKDQTLQERIEWAKMLMDPTDI EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH SDVTGAVMTFLVNGHGPKDNWTALFTPGERVRLRFVNAAAQMIFNVRIPGLKLTVVAADG HHHHHHHHHEEECCCCCCCCCEEEECCCCEEEEEEEEHHEEEEEEEECCCEEEEEEEECC QNVRPVEVDEFQIGNAETYDIIVQPTEDRAYTLVSEAIDRSGMGRATLAPRPGMSAPVPP CCCCCEECCCEECCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC LRERPILTMKDMGMDMSAHGGHGAMAGMDHANMPGMTPAPAAADHANMPGMTPAPAAADH CCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANMPGMDHAAMTAMSTSPPPGMAPPRARGSDVMGDMAGMDMNMLDWSKAPQIKKGPGVQM CCCCCCCHHHHEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCEE ISPMPMDRTGEAGLGLESVGHRVLVYKDLVALEPNPDPRAPERAVEIRLTGNMERFMWGF ECCCCCCCCCCCCCCHHHHCCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHEEEEC DGWKFSEGPPPYSFRTGERVRITLVNDSMMTHPIHLHGHFFELVHGPVGHLPRKHTVNVA CCEECCCCCCCCCCCCCCEEEEEEECCCCEECEEEECHHHHHHHCCCHHCCCCCCEEEEC PGGKVSFDITAEAGDWAFHCHMLYHMHAGMFQVFKVRPMQGAAA CCCEEEEEEEECCCCEEEEEHHHHHHHCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8594334 [H]