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The map label for this gene is yhdY [H]

Identifier: 197104924

GI number: 197104924

Start: 1657634

End: 1658710

Strand: Reverse

Name: yhdY [H]

Synonym: PHZ_c1459

Alternate gene names: 197104924

Gene position: 1658710-1657634 (Counterclockwise)

Preceding gene: 197104925

Following gene: 197104923

Centisome position: 41.51

GC content: 72.24

Gene sequence:

>1077_bases
ATGACCTCCGTCGCGACCCCGGGCCCGCCGCGGGCCGCCCGCGGCCCCGCCGTCCTGGCCGCGAGGCTGTTCGGCTCGCC
GCTCAACGTCGTCCTGACCCTGGCCGTGGCCTGGGCGGCCTGGTCCCTGGCCGCGCCGCTGGTGCGTTGGGCGGTGCTGG
ACGCCGCCGTCCTGCCGGCCGAACCCGCCGCCTGCCGCGACATCTCGGGGGCCTGCTGGAGCTTCGTCGTCGCCAAAAGC
GGCCAGATCCTGTTCGGCATCTATCCCATCGAGGAGCGGTGGCGGCCGACCCTCGTGTGCGCCGTGCTGCTGGGCCTGCT
CGCCTATTCGCTGCGGCCGGCCGCCTGGCGGCCGCACCTGGCCGCGCTCTGGGCCGCGGCCCTGCCCGGCGTGCTGCTCC
TGATGTTCGGCGGCTTCGCCGGCCTGAGCTATGTGGCCACCACCATGTGGGGCGGCCTGCCCGTCACCCTCATCCTCACC
GTCACCGCCATCGGCGGCGCCTTTCCGCTGGCCATCCTGCTGGCCCTCGGCCGCCGCGCCGACCTGCCGGTGATCCGTAC
GCTATGCGTGCTGTTCATCGAGGTCACCCGGGCGATGCCGCTGCTGAGCCTGCTGTTCATCGCCTCGATCATGTTGCCGC
TGCTGCTTCCGGAGCCGCTGCTGCCCGACAAGTTCTTCCGGGCGATGATCGCGCTGCTGCTCTTCGCCGCCGCCTACCTG
GCGGAGGTGATCCGCGGCGGCCTGCAGGCCTTGCCGCCCGGCCAGGCCGAGGCGGCCCGGGCGCTGGGGCTCGGCTACTG
GCGGACCCAGCGCTTCGTGGTGCTGCCGCAGGCCCTGGCCCTCGTGATCCCGAGCCTCACCAACACCATCATCGTGATGA
TCAAGAACACCAGCCTCGTCCTGGTGGTGGGACTGTTCGACCTGATCAGCTCCGGCCGGGCGGCCCTGGCCGACCCGGAG
TGGAGCTCCCCCGCCATGGAGACCTACATCTTCATCGCGTCCGTCTATTTCGCCCTGTGCTTCGGCTTCGGCCGCTTCGC
CCGGGCGCTCGAACGCCGCGCCGAGGCCACGCCATGA

Upstream 100 bases:

>100_bases
GGCACCCTGATCATTCTCCTCGTCTACCTGGCGCTGAACCTGGCGCTGGCGGCCCTGCTCGACCTCTACAACCGGCGCGT
CCAGCTGGAGGGCCGCTGAG

Downstream 100 bases:

>100_bases
CCCGAGAGACGCCTTCCCCCGCCGCAGACCTGGCCGTCGAGGTCCGCGACCTCCACAAGTGGTATGGCGAGTTCCACGCC
CTGCGGGGCGTGGAACTCGC

Product: ABC-type amino acid transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MTSVATPGPPRAARGPAVLAARLFGSPLNVVLTLAVAWAAWSLAAPLVRWAVLDAAVLPAEPAACRDISGACWSFVVAKS
GQILFGIYPIEERWRPTLVCAVLLGLLAYSLRPAAWRPHLAALWAAALPGVLLLMFGGFAGLSYVATTMWGGLPVTLILT
VTAIGGAFPLAILLALGRRADLPVIRTLCVLFIEVTRAMPLLSLLFIASIMLPLLLPEPLLPDKFFRAMIALLLFAAAYL
AEVIRGGLQALPPGQAEAARALGLGYWRTQRFVVLPQALALVIPSLTNTIIVMIKNTSLVLVVGLFDLISSGRAALADPE
WSSPAMETYIFIASVYFALCFGFGRFARALERRAEATP

Sequences:

>Translated_358_residues
MTSVATPGPPRAARGPAVLAARLFGSPLNVVLTLAVAWAAWSLAAPLVRWAVLDAAVLPAEPAACRDISGACWSFVVAKS
GQILFGIYPIEERWRPTLVCAVLLGLLAYSLRPAAWRPHLAALWAAALPGVLLLMFGGFAGLSYVATTMWGGLPVTLILT
VTAIGGAFPLAILLALGRRADLPVIRTLCVLFIEVTRAMPLLSLLFIASIMLPLLLPEPLLPDKFFRAMIALLLFAAAYL
AEVIRGGLQALPPGQAEAARALGLGYWRTQRFVVLPQALALVIPSLTNTIIVMIKNTSLVLVVGLFDLISSGRAALADPE
WSSPAMETYIFIASVYFALCFGFGRFARALERRAEATP
>Mature_357_residues
TSVATPGPPRAARGPAVLAARLFGSPLNVVLTLAVAWAAWSLAAPLVRWAVLDAAVLPAEPAACRDISGACWSFVVAKSG
QILFGIYPIEERWRPTLVCAVLLGLLAYSLRPAAWRPHLAALWAAALPGVLLLMFGGFAGLSYVATTMWGGLPVTLILTV
TAIGGAFPLAILLALGRRADLPVIRTLCVLFIEVTRAMPLLSLLFIASIMLPLLLPEPLLPDKFFRAMIALLLFAAAYLA
EVIRGGLQALPPGQAEAARALGLGYWRTQRFVVLPQALALVIPSLTNTIIVMIKNTSLVLVVGLFDLISSGRAALADPEW
SSPAMETYIFIASVYFALCFGFGRFARALERRAEATP

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=364, Percent_Identity=46.4285714285714, Blast_Score=314, Evalue=5e-87,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=31.25, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=30.8823529411765, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786874, Length=208, Percent_Identity=30.2884615384615, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI48994930, Length=124, Percent_Identity=37.0967741935484, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788645, Length=176, Percent_Identity=34.0909090909091, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788226, Length=154, Percent_Identity=35.0649350649351, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38180; Mature: 38049

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVATPGPPRAARGPAVLAARLFGSPLNVVLTLAVAWAAWSLAAPLVRWAVLDAAVLPA
CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPAACRDISGACWSFVVAKSGQILFGIYPIEERWRPTLVCAVLLGLLAYSLRPAAWRPHL
CCHHHHCCCHHHHHHHHHCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCHHH
AALWAAALPGVLLLMFGGFAGLSYVATTMWGGLPVTLILTVTAIGGAFPLAILLALGRRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
DLPVIRTLCVLFIEVTRAMPLLSLLFIASIMLPLLLPEPLLPDKFFRAMIALLLFAAAYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AEVIRGGLQALPPGQAEAARALGLGYWRTQRFVVLPQALALVIPSLTNTIIVMIKNTSLV
HHHHHHHHHCCCCCHHHHHHHHHCHHHHCCHHEEHHHHHHHHHHHHCCEEEEEEECCCHH
LVVGLFDLISSGRAALADPEWSSPAMETYIFIASVYFALCFGFGRFARALERRAEATP
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSVATPGPPRAARGPAVLAARLFGSPLNVVLTLAVAWAAWSLAAPLVRWAVLDAAVLPA
CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPAACRDISGACWSFVVAKSGQILFGIYPIEERWRPTLVCAVLLGLLAYSLRPAAWRPHL
CCHHHHCCCHHHHHHHHHCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCHHH
AALWAAALPGVLLLMFGGFAGLSYVATTMWGGLPVTLILTVTAIGGAFPLAILLALGRRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
DLPVIRTLCVLFIEVTRAMPLLSLLFIASIMLPLLLPEPLLPDKFFRAMIALLLFAAAYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AEVIRGGLQALPPGQAEAARALGLGYWRTQRFVVLPQALALVIPSLTNTIIVMIKNTSLV
HHHHHHHHHCCCCCHHHHHHHHHCHHHHCCHHEEHHHHHHHHHHHHCCEEEEEEECCCHH
LVVGLFDLISSGRAALADPEWSSPAMETYIFIASVYFALCFGFGRFARALERRAEATP
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]