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The map label for this gene is yjjV [H]

Identifier: 197104889

GI number: 197104889

Start: 1615038

End: 1615808

Strand: Direct

Name: yjjV [H]

Synonym: PHZ_c1424

Alternate gene names: 197104889

Gene position: 1615038-1615808 (Clockwise)

Preceding gene: 197104888

Following gene: 197104890

Centisome position: 40.41

GC content: 69.39

Gene sequence:

>771_bases
ATGACGCTCCCGCAATCGGCGCGCCCGCGCCTGGTCGACTTCCACTGTCATCTCGACCTCTACCCGGACCATGCCGCGCT
CATCCGTGAATGTGACCGCGAACGCGTGGCCACGCTCGCGGTGACCACGACGCCGAAGGCGTGGCCGCGGAATCGCGATC
TGGCCGAGGCTTCGACCCATGTGCGGGTCGCGCTCGGCCTGCATCCGCAGCTGGTCGCCGAACGCGAGGCCGAGCTGCCG
TTGTTCGAACGCTACCTGTCCGAAGCGCGCTATGTCGGCGAGGTCGGGCTCGATGCCGGTCCCCGCTTCTATCGCAGCTT
CGAGGCCCAGGAGCGCGTGTTCACGCGCGTGCTCGCCGCCTGCGCCGAACAGGGCAACAAGATCCTGACGCTCCACAGCG
TCCGGGCCGTGGGCAAGGTGCTCGGTCATCTCGACCGCGCCCTGCCGCCGGATCGTGGGCGCGTCATCCTCCACTGGTTC
ACCGGGACCGCGGCAGAGGCCCGCAGAGCCTCCGAGCGCGGCTGCTACTTCTCGATCAACTCGGAGATGCTGCGCTCGCC
CAAGCACCGCCAGCTCGTCGCCGGTCTTCCAGCGGATCGGCTGCTCACCGAGACCGATGGTCCCTTCGTCGAGGCCGCCG
GACGACCCGTCCGGCCCTCCGCGGTCGCGCAGACCGTCGCCGACCTCGCGACGCTCAGGGGTGAGACCGCCGACGTTATG
GCTCAACGAATCGTGGCCAATCTCCGCGCCCTCGTGACGGCCGTGGACTGA

Upstream 100 bases:

>100_bases
TGACGGACCACCCGGGCGATCTCGCCGCCTACGAGAAGGTCTATGTCGACGGGCTGCAGGAGGTCGGACGCCTGCTGAAG
GGTGTGCGGGCCCGGCCGCG

Downstream 100 bases:

>100_bases
GGGAGAGACATCATCGCCGCGATCCGATCCGTCGATCTGAGGTTAGTCGAGGAGCTGGTCGAGTTCGTGCGCGGCCGCGG
CTATGTGCTCGACTTCTCCG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTLPQSARPRLVDFHCHLDLYPDHAALIRECDRERVATLAVTTTPKAWPRNRDLAEASTHVRVALGLHPQLVAEREAELP
LFERYLSEARYVGEVGLDAGPRFYRSFEAQERVFTRVLAACAEQGNKILTLHSVRAVGKVLGHLDRALPPDRGRVILHWF
TGTAAEARRASERGCYFSINSEMLRSPKHRQLVAGLPADRLLTETDGPFVEAAGRPVRPSAVAQTVADLATLRGETADVM
AQRIVANLRALVTAVD

Sequences:

>Translated_256_residues
MTLPQSARPRLVDFHCHLDLYPDHAALIRECDRERVATLAVTTTPKAWPRNRDLAEASTHVRVALGLHPQLVAEREAELP
LFERYLSEARYVGEVGLDAGPRFYRSFEAQERVFTRVLAACAEQGNKILTLHSVRAVGKVLGHLDRALPPDRGRVILHWF
TGTAAEARRASERGCYFSINSEMLRSPKHRQLVAGLPADRLLTETDGPFVEAAGRPVRPSAVAQTVADLATLRGETADVM
AQRIVANLRALVTAVD
>Mature_255_residues
TLPQSARPRLVDFHCHLDLYPDHAALIRECDRERVATLAVTTTPKAWPRNRDLAEASTHVRVALGLHPQLVAEREAELPL
FERYLSEARYVGEVGLDAGPRFYRSFEAQERVFTRVLAACAEQGNKILTLHSVRAVGKVLGHLDRALPPDRGRVILHWFT
GTAAEARRASERGCYFSINSEMLRSPKHRQLVAGLPADRLLTETDGPFVEAAGRPVRPSAVAQTVADLATLRGETADVMA
QRIVANLRALVTAVD

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=31.2977099236641, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28340; Mature: 28209

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPQSARPRLVDFHCHLDLYPDHAALIRECDRERVATLAVTTTPKAWPRNRDLAEASTH
CCCCCCCCCCEEEEEEEEEECCCHHHHHHHHCHHHHEEEEEEECCCCCCCCCCHHHHCCE
VRVALGLHPQLVAEREAELPLFERYLSEARYVGEVGLDAGPRFYRSFEAQERVFTRVLAA
EEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
CAEQGNKILTLHSVRAVGKVLGHLDRALPPDRGRVILHWFTGTAAEARRASERGCYFSIN
HHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEC
SEMLRSPKHRQLVAGLPADRLLTETDGPFVEAAGRPVRPSAVAQTVADLATLRGETADVM
HHHHHCCCHHHHHHCCCHHHHEECCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
AQRIVANLRALVTAVD
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLPQSARPRLVDFHCHLDLYPDHAALIRECDRERVATLAVTTTPKAWPRNRDLAEASTH
CCCCCCCCCEEEEEEEEEECCCHHHHHHHHCHHHHEEEEEEECCCCCCCCCCHHHHCCE
VRVALGLHPQLVAEREAELPLFERYLSEARYVGEVGLDAGPRFYRSFEAQERVFTRVLAA
EEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
CAEQGNKILTLHSVRAVGKVLGHLDRALPPDRGRVILHWFTGTAAEARRASERGCYFSIN
HHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEC
SEMLRSPKHRQLVAGLPADRLLTETDGPFVEAAGRPVRPSAVAQTVADLATLRGETADVM
HHHHHCCCHHHHHHCCCHHHHEECCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
AQRIVANLRALVTAVD
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]