Click here to switch to the map view.

The map label for this gene is soxR [C]

Identifier: 197104817

GI number: 197104817

Start: 1532507

End: 1532944

Strand: Direct

Name: soxR [C]

Synonym: PHZ_c1351

Alternate gene names: 197104817

Gene position: 1532507-1532944 (Clockwise)

Preceding gene: 197104815

Following gene: 197104819

Centisome position: 38.35

GC content: 74.89

Gene sequence:

>438_bases
ATGGCCGAACTGGACATCGCAGAGGTGGCGCGGCGGTCGGGCGTGCCCGCCTCGACCCTGCGGTTCTACGAGGAGAAGGG
GCTGATCGCCTCGGTGGGCCGGCGGGGCCTGCGCAGGCTGTTCGAGCCCTCGGTGCTGGAGCGGCTGTCGCTGATCGCCC
TCGGCCGGGCGGCGGGGTTCTCGCTGGACGAGATCGTGGAGATGTTCGCGCCGGACGGGAGCCCCCGCATCGACCGCGCG
CGCCTGACCGCCAAGGCCGAGGCGCTGGACGACGTCATCCGCCGGCTGACCGCCATGCGTGAGGGCCTGCGCCACGCCGC
CGCCTGCCCGGCGCCCAGTCCGATGGAGTGCCCGCACTTCCTGCGGATCGTGCGGATGGCGGGCGAGGGGCGGCTGGGTC
CGCCGCCCCGCCGCACCTTCGTGGCCGAGGCGCTCTAG

Upstream 100 bases:

>100_bases
TCGGGGCGGCGGTTGCTGACATTGGGAGGCTCCTTCGGCTTGCCCTCGAGGGTTCGTGCGGCGCAGTGTGCAAGTTCAAG
CTGACTTGAGGTCAACCCCC

Downstream 100 bases:

>100_bases
GCGCCGAACAGGTCGATCTGGTCGCCGGCCTTCGGCGGAACCCGGAACCGGAAGACGTCCAGTTCGCCCCAGCGCTGGGT
GAGGCCGTAGCGCTTCTGAG

Product: transcriptional regulator, MerR family

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Redox-Sensitive Transcriptional Activator SoxR; Transcriptional Regulator MerR Family Protein; Redox-Sensitive Transcriptional Activator; Cu(I)-Responsive Transcriptional Regulator; Regulatory Protein; Regulatory Protein MerR; Transcriptional Activator For Superoxide Response; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; SoxR Protein; Zn(II)-Responsive Transcriptional Regulator; Transcriptional Activator; SoxR Family Transcriptional Regulator; Transcriptional Regulator Merr Family; MerR Family Regulatory Family

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAELDIAEVARRSGVPASTLRFYEEKGLIASVGRRGLRRLFEPSVLERLSLIALGRAAGFSLDEIVEMFAPDGSPRIDRA
RLTAKAEALDDVIRRLTAMREGLRHAAACPAPSPMECPHFLRIVRMAGEGRLGPPPRRTFVAEAL

Sequences:

>Translated_145_residues
MAELDIAEVARRSGVPASTLRFYEEKGLIASVGRRGLRRLFEPSVLERLSLIALGRAAGFSLDEIVEMFAPDGSPRIDRA
RLTAKAEALDDVIRRLTAMREGLRHAAACPAPSPMECPHFLRIVRMAGEGRLGPPPRRTFVAEAL
>Mature_144_residues
AELDIAEVARRSGVPASTLRFYEEKGLIASVGRRGLRRLFEPSVLERLSLIALGRAAGFSLDEIVEMFAPDGSPRIDRAR
LTAKAEALDDVIRRLTAMREGLRHAAACPAPSPMECPHFLRIVRMAGEGRLGPPPRRTFVAEAL

Specific function: Activates The Transcription Of The Soxs Gene Which Itself Controls The Superoxide Response Regulon. Soxr Contains A 2fe-2s Iron-Sulfur Cluster That May Act As A Redox Sensor System That Recognizes Superoxide. The Variable Redox State Of The Fe-S Cluster I

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790498, Length=117, Percent_Identity=35.8974358974359, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15905; Mature: 15774

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELDIAEVARRSGVPASTLRFYEEKGLIASVGRRGLRRLFEPSVLERLSLIALGRAAGF
CCCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
SLDEIVEMFAPDGSPRIDRARLTAKAEALDDVIRRLTAMREGLRHAAACPAPSPMECPHF
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LRIVRMAGEGRLGPPPRRTFVAEAL
HHHHHHHCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
AELDIAEVARRSGVPASTLRFYEEKGLIASVGRRGLRRLFEPSVLERLSLIALGRAAGF
CCCCHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
SLDEIVEMFAPDGSPRIDRARLTAKAEALDDVIRRLTAMREGLRHAAACPAPSPMECPHF
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LRIVRMAGEGRLGPPPRRTFVAEAL
HHHHHHHCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA