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The map label for this gene is rarA [H]

Identifier: 197104728

GI number: 197104728

Start: 1439057

End: 1440361

Strand: Direct

Name: rarA [H]

Synonym: PHZ_c1262

Alternate gene names: 197104728

Gene position: 1439057-1440361 (Clockwise)

Preceding gene: 197104727

Following gene: 197104729

Centisome position: 36.01

GC content: 70.88

Gene sequence:

>1305_bases
ATGGCCGACCTCTTCGAAGCCGCGGGCCTGACGCCCCAGCAGCCATCGCCGCTGGCCGACCGGCTGCGCCCGCAGCGGCT
GGAAGAGGTGGTCGGCCAGGACCACCTCCTGGGGCCCGACGGGCCGATCCGCCGGATGGCCGAGGCCCGGCGGCTGTCGT
CGATGATCCTCTGGGGGCCGCCCGGCACCGGCAAGACCACCATCGCCCGCCTGCTGGCTAAGGAGGCCGGCTACGAGTTC
CAGCAGCTCTCGGCCGTGTTCTCGGGCGTCGCGGACCTGAAGAAGGCGTTCGAGCAGGCCCGGGCCCGCCGCGCCGCCGG
CCAGGCCACCTTGCTCTTCGTGGACGAGATCCACCGCTTCAACCGCGCCCAGCAGGACGGCTTCCTGCCCTTCGTGGAGG
AGGGGATCGTCACCCTGGTGGGCGCGACGACGGAGAACCCCTCGTTCGAGCTGAACGGCGCGCTGCTGTCCCGCTGCCAG
GTCTATGTGCTGAAGCGCCTGGACGAGGCGGCGCTGGAGGCCCTGCTCGCCAAGGCGGAGGCCCACGAGGGGCGGCCGCT
GCCGCTGGAGCCCGACGCGCGAGCCGCCCTGACGGCCCTGGCCGACGGCGACGGGCGATACCTGCTGACCCTGTCCGAGA
CCCTGTTCAACATCGCCTCGGCGAAGCCGCTGACGACCAAGGAGCTGGGCCAGATCCTGCAGAAGCGCAGCCCGGCCTAC
GACAAGGACCGGGAGGAGCACTACAACCTCGTCTCGGCCCTGCATAAGTCGATCCGCGGTTCGGACCCCGACGCGGCGCT
CTACTGGCTGGCCAGGATGCTGCAGGGCGGGGAGGATCCGCTGTTCATCGCCCGCCGGCTGATCCGCGCCGCCGCCGAGG
ACATCGGCGAGGCCGACCCGATGAGCCTGGTGCTCGCGAACGCCGCCAAGGACACCTACGACTTCCTGGGCAGCCCGGAG
GGCGAGATCGCCCTGGCGCAGCTCGTGGTCCACCTGGCCGCCGCGCCGAAGTCGAACGCCGTCTACAAGGCCTTCGGCGC
GGCGATGAAGGCGGCGAAGGAGACGGGCTCGCTCATGCCGCCCAGCCATATCCTGAATGCGCCCACGCGGCTGATGAAGG
ACCTCGGCTACGGCAGGGGCTACGCCTACGACCACGACACGGCCGAAGGCTTCTCGGGCCAGAACTACTTTCCCGAGGGG
ATGGAGCGGCGCCAGTTCTACAAGCCCCGCGGCGACGGCAACGAGGCGCGGATCAAGGAGCGGCTTGAACGCTGGGCGGC
GCTGCGCCGCGAAAAGGGCGACTGA

Upstream 100 bases:

>100_bases
CGCGGATGGCAGATCGCCTTCGAGCGAGGCGGCCAGCTGATCACCGCCCGGTTCTGAGACGCCTCGTGGCGCGGGGCGGC
TTTGTGCTAAGCCGCAGCTC

Downstream 100 bases:

>100_bases
TCAGCGATCATTGTTATCCGGGCGAACCGGGCCTAGGCTCCCCCCATCGTCTCTGGGGAGGGAACGACAATGACCACCAC
CACTATGGAAACCTCTGCGC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MADLFEAAGLTPQQPSPLADRLRPQRLEEVVGQDHLLGPDGPIRRMAEARRLSSMILWGPPGTGKTTIARLLAKEAGYEF
QQLSAVFSGVADLKKAFEQARARRAAGQATLLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQ
VYVLKRLDEAALEALLAKAEAHEGRPLPLEPDARAALTALADGDGRYLLTLSETLFNIASAKPLTTKELGQILQKRSPAY
DKDREEHYNLVSALHKSIRGSDPDAALYWLARMLQGGEDPLFIARRLIRAAAEDIGEADPMSLVLANAAKDTYDFLGSPE
GEIALAQLVVHLAAAPKSNAVYKAFGAAMKAAKETGSLMPPSHILNAPTRLMKDLGYGRGYAYDHDTAEGFSGQNYFPEG
MERRQFYKPRGDGNEARIKERLERWAALRREKGD

Sequences:

>Translated_434_residues
MADLFEAAGLTPQQPSPLADRLRPQRLEEVVGQDHLLGPDGPIRRMAEARRLSSMILWGPPGTGKTTIARLLAKEAGYEF
QQLSAVFSGVADLKKAFEQARARRAAGQATLLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQ
VYVLKRLDEAALEALLAKAEAHEGRPLPLEPDARAALTALADGDGRYLLTLSETLFNIASAKPLTTKELGQILQKRSPAY
DKDREEHYNLVSALHKSIRGSDPDAALYWLARMLQGGEDPLFIARRLIRAAAEDIGEADPMSLVLANAAKDTYDFLGSPE
GEIALAQLVVHLAAAPKSNAVYKAFGAAMKAAKETGSLMPPSHILNAPTRLMKDLGYGRGYAYDHDTAEGFSGQNYFPEG
MERRQFYKPRGDGNEARIKERLERWAALRREKGD
>Mature_433_residues
ADLFEAAGLTPQQPSPLADRLRPQRLEEVVGQDHLLGPDGPIRRMAEARRLSSMILWGPPGTGKTTIARLLAKEAGYEFQ
QLSAVFSGVADLKKAFEQARARRAAGQATLLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQV
YVLKRLDEAALEALLAKAEAHEGRPLPLEPDARAALTALADGDGRYLLTLSETLFNIASAKPLTTKELGQILQKRSPAYD
KDREEHYNLVSALHKSIRGSDPDAALYWLARMLQGGEDPLFIARRLIRAAAEDIGEADPMSLVLANAAKDTYDFLGSPEG
EIALAQLVVHLAAAPKSNAVYKAFGAAMKAAKETGSLMPPSHILNAPTRLMKDLGYGRGYAYDHDTAEGFSGQNYFPEGM
ERRQFYKPRGDGNEARIKERLERWAALRREKGD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=43.4389140271493, Blast_Score=333, Evalue=2e-91,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=39.3665158371041, Blast_Score=280, Evalue=3e-75,
Organism=Escherichia coli, GI1787119, Length=422, Percent_Identity=47.39336492891, Blast_Score=385, Evalue=1e-108,
Organism=Saccharomyces cerevisiae, GI6324111, Length=432, Percent_Identity=41.4351851851852, Blast_Score=305, Evalue=7e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=208, Percent_Identity=27.8846153846154, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47622; Mature: 47490

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFEAAGLTPQQPSPLADRLRPQRLEEVVGQDHLLGPDGPIRRMAEARRLSSMILWGP
CCCHHHHCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEECC
PGTGKTTIARLLAKEAGYEFQQLSAVFSGVADLKKAFEQARARRAAGQATLLFVDEIHRF
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHH
NRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVYVLKRLDEAALEALLAKAE
HHHHCCCCCHHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHEGRPLPLEPDARAALTALADGDGRYLLTLSETLFNIASAKPLTTKELGQILQKRSPAY
HCCCCCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
DKDREEHYNLVSALHKSIRGSDPDAALYWLARMLQGGEDPLFIARRLIRAAAEDIGEADP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
MSLVLANAAKDTYDFLGSPEGEIALAQLVVHLAAAPKSNAVYKAFGAAMKAAKETGSLMP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
PSHILNAPTRLMKDLGYGRGYAYDHDTAEGFSGQNYFPEGMERRQFYKPRGDGNEARIKE
CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHH
RLERWAALRREKGD
HHHHHHHHHHCCCC
>Mature Secondary Structure 
ADLFEAAGLTPQQPSPLADRLRPQRLEEVVGQDHLLGPDGPIRRMAEARRLSSMILWGP
CCHHHHCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEEEECC
PGTGKTTIARLLAKEAGYEFQQLSAVFSGVADLKKAFEQARARRAAGQATLLFVDEIHRF
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHH
NRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVYVLKRLDEAALEALLAKAE
HHHHCCCCCHHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHEGRPLPLEPDARAALTALADGDGRYLLTLSETLFNIASAKPLTTKELGQILQKRSPAY
HCCCCCCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
DKDREEHYNLVSALHKSIRGSDPDAALYWLARMLQGGEDPLFIARRLIRAAAEDIGEADP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
MSLVLANAAKDTYDFLGSPEGEIALAQLVVHLAAAPKSNAVYKAFGAAMKAAKETGSLMP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
PSHILNAPTRLMKDLGYGRGYAYDHDTAEGFSGQNYFPEGMERRQFYKPRGDGNEARIKE
CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHH
RLERWAALRREKGD
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]