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The map label for this gene is yjfH [C]

Identifier: 197104675

GI number: 197104675

Start: 1393116

End: 1393913

Strand: Reverse

Name: yjfH [C]

Synonym: PHZ_c1209

Alternate gene names: 197104675

Gene position: 1393913-1393116 (Counterclockwise)

Preceding gene: 197104689

Following gene: 197104674

Centisome position: 34.88

GC content: 74.69

Gene sequence:

>798_bases
GTGGCCTCGATCCCTGAACGCAACGACGCCCGACGTGGGAAAAAATTCCGCCCGCAAAGCGGCTTCCGCAAGCCCCGCGA
AGCCCCGTCCGACGAGTGGATCTGGGGCTGGCACGCGGTGGAGGCCGCCCTGGCCAATCCCCGCCGCGGCGCCCCGCTGC
GGCTGCTCGCCACGCCAGAGAAGGCGAAGCAGATCGAGGCGCGATTCGGCCGGCTGAAGGCGCTCGAGCCCGCCGACAAC
CACGCCATCGCCCAGGCCCTGCCGCAGGGGGCGGTGCACCAGGGGGTGGCGCTGCGCCCTGCCCCCCTCCCCGAGGCCGA
CCTCGCCGACTTCGAACCCCGGCCCGGCGCGGTGCTGCTGATGCTGGACCAGGTGACCGACCCGCAGAACGTCGGGGCGA
TTCTCCGCTCCGCCGCCGCATTCGGCGCGGCGGGCCTCATCCTGCAGGACCGCCACGCGCCCAAGCTGACCGGCGCCCTG
GCCAAGGCCGCCGCGGGCGCCGTCGAGCGGACGCCGGTCGCCCACGTGGTGAACCTGTCCCGCGCCCTGGACGAGCTGAT
CGACGCCGGCTGGCGCACGGTGGGCCTGGCGGGCGGCGGCGAGCGCAGCCTCGGCGAAGTGCTGGACGGCTCGCCCGTCG
TGCTGGTGCTGGGGTCGGAGGGCGAGGGCCTTCGCCGGCTGGTGGCCGAACGCTGCGACGAGCTGGCCCGCATCCCCATG
CCCGGCGGCTTCGAGAGCCTCAACGTCTCGAACGCGGCGGCCATCGCGCTCTACGAGGCCAGCCGTCCGCGAGGCTGA

Upstream 100 bases:

>100_bases
TGCTTCCGCTCCGGGATGCGAGGGGCCTATTGAGCGCCGTCTGCACAGTCCTAGAAAGCGGCGGCCCGTCCGGGGTCCCC
GATTTGGAGCGCGTCTTATA

Downstream 100 bases:

>100_bases
ACAGTTGCAGCCAGTCGCCCGCTGAAGCATTGAGGCGCGATGTTCGAAGAGCTGCTCAGCCCCGGCGCCCTCTCCGCCCT
CCTGCAAGTCCTGATGATCG

Product: spoU rRNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MASIPERNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQIEARFGRLKALEPADN
HAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLLMLDQVTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGAL
AKAAAGAVERTPVAHVVNLSRALDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPM
PGGFESLNVSNAAAIALYEASRPRG

Sequences:

>Translated_265_residues
MASIPERNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQIEARFGRLKALEPADN
HAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLLMLDQVTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGAL
AKAAAGAVERTPVAHVVNLSRALDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPM
PGGFESLNVSNAAAIALYEASRPRG
>Mature_264_residues
ASIPERNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQIEARFGRLKALEPADNH
AIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLLMLDQVTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALA
KAAAGAVERTPVAHVVNLSRALDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPMP
GGFESLNVSNAAAIALYEASRPRG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=193, Percent_Identity=36.7875647668394, Blast_Score=91, Evalue=8e-19,
Organism=Escherichia coli, GI1790623, Length=241, Percent_Identity=38.5892116182573, Blast_Score=132, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17555908, Length=251, Percent_Identity=30.6772908366534, Blast_Score=88, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6324775, Length=315, Percent_Identity=27.9365079365079, Blast_Score=94, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28047; Mature: 27916

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIPERNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPE
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCEEEEECCH
KAKQIEARFGRLKALEPADNHAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLL
HHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHCCCEECCCCCCCCCCCCCCCCCCEEEE
MLDQVTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLS
EEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCHHCCHHHHHHHHH
RALDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPM
HHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCC
PGGFESLNVSNAAAIALYEASRPRG
CCCCCCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
ASIPERNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPE
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCEEEEECCH
KAKQIEARFGRLKALEPADNHAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLL
HHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHCCCEECCCCCCCCCCCCCCCCCCEEEE
MLDQVTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLS
EEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCHHCCHHHHHHHHH
RALDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPM
HHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCC
PGGFESLNVSNAAAIALYEASRPRG
CCCCCCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]