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The map label for this gene is gumB [C]

Identifier: 197104615

GI number: 197104615

Start: 1318766

End: 1319509

Strand: Reverse

Name: gumB [C]

Synonym: PHZ_c1149

Alternate gene names: 197104615

Gene position: 1319509-1318766 (Counterclockwise)

Preceding gene: 197104616

Following gene: 197104614

Centisome position: 33.02

GC content: 68.41

Gene sequence:

>744_bases
TTGATGGGCGCGGATGTGCGCCCGGCGCGCATTCGAAATCGTCTGGTCGCGATTCCACGGAGCCCCATCATGCGCAGGCA
TCTCACCTCGCTCGCCGCCGCCGCGCTGCTGGCGTCGGCCGCCCCCACCCTCGCCTTCGCTGCGAGCAAGCTGCCCCCGC
CGGATTCGGCGGGCCTCCTGTCCCCCGCCGCCGCCGACTACCGGATCGGCGCCCAGGACGTGCTGGAGGTGAACGTCTTC
GGCATCGAGGAGCTCAAGCGCGAGGTCCAGGTGAACGCCGGGGGCAAGGTGATCCTGCCGCTCGTCGGCGAGCTGCAGGC
CGGCGGCCGCACGCCCGGTGAGTTCTCGGAAGACGTCGAGGCCGCCCTGAAGGCCAAGTACATGAAGGACCCGCAGGTCA
TCGTGACGGTCAAGAACGCCCAGAGCCAGCGGGTCACGATCGACGGCGCGGTCAACAAGCCGGGCGTCTATCCCCTCTCC
GGCCCCACGACCCTGCTGCAGGCGGTCTCTCTTGGGGGCGGACCGGACCAGAAGCTGGCCAACGTGAAGAAGGTCGCTGT
CTTCCGGCAGGTGGGCGGCAAGCGCCACGCGGCCACCTTCAACCTGAACGACATCCGCGAGGGCAAGACCGAGGACCCGC
AGATCTACGGTAACGACATCGTGGTCGTCGACACCTCCAGCGGCAACCGCTTCATCCAGAACTTCCAGGGCGTGTTCCCG
CTCCTGGGCTTCCTGGCCTGGTGA

Upstream 100 bases:

>100_bases
GCGCTCCACGCCGGCGTCGTGGCCAGGCTCGCCGGCTGGCGCGAGCTCCAACTCTACTGATCCTGGCGGCGGCCGGGGAA
CGGCCGCGAGCCCCCGCGAG

Downstream 100 bases:

>100_bases
TCCGGCGTCCCGCCGTGGCCGCGAACACCCATCGCCAGGCGAACCCCGCCCAACCGCACCCGGACCGCGGAACCGCCGGT
TGGGGTCGGGGTTATCAGCA

Product: polysaccharide export protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MMGADVRPARIRNRLVAIPRSPIMRRHLTSLAAAALLASAAPTLAFAASKLPPPDSAGLLSPAAADYRIGAQDVLEVNVF
GIEELKREVQVNAGGKVILPLVGELQAGGRTPGEFSEDVEAALKAKYMKDPQVIVTVKNAQSQRVTIDGAVNKPGVYPLS
GPTTLLQAVSLGGGPDQKLANVKKVAVFRQVGGKRHAATFNLNDIREGKTEDPQIYGNDIVVVDTSSGNRFIQNFQGVFP
LLGFLAW

Sequences:

>Translated_247_residues
MMGADVRPARIRNRLVAIPRSPIMRRHLTSLAAAALLASAAPTLAFAASKLPPPDSAGLLSPAAADYRIGAQDVLEVNVF
GIEELKREVQVNAGGKVILPLVGELQAGGRTPGEFSEDVEAALKAKYMKDPQVIVTVKNAQSQRVTIDGAVNKPGVYPLS
GPTTLLQAVSLGGGPDQKLANVKKVAVFRQVGGKRHAATFNLNDIREGKTEDPQIYGNDIVVVDTSSGNRFIQNFQGVFP
LLGFLAW
>Mature_247_residues
MMGADVRPARIRNRLVAIPRSPIMRRHLTSLAAAALLASAAPTLAFAASKLPPPDSAGLLSPAAADYRIGAQDVLEVNVF
GIEELKREVQVNAGGKVILPLVGELQAGGRTPGEFSEDVEAALKAKYMKDPQVIVTVKNAQSQRVTIDGAVNKPGVYPLS
GPTTLLQAVSLGGGPDQKLANVKKVAVFRQVGGKRHAATFNLNDIREGKTEDPQIYGNDIVVVDTSSGNRFIQNFQGVFP
LLGFLAW

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=168, Percent_Identity=30.952380952381, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 26230; Mature: 26230

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGADVRPARIRNRLVAIPRSPIMRRHLTSLAAAALLASAAPTLAFAASKLPPPDSAGLL
CCCCCCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCC
SPAAADYRIGAQDVLEVNVFGIEELKREVQVNAGGKVILPLVGELQAGGRTPGEFSEDVE
CCCCCCCCCCHHHEEEEEEECHHHHHHHHEECCCCEEEEEEHHHHCCCCCCCCCHHHHHH
AALKAKYMKDPQVIVTVKNAQSQRVTIDGAVNKPGVYPLSGPTTLLQAVSLGGGPDQKLA
HHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEECCCHHHHHHHHHCCCCCCHHHH
NVKKVAVFRQVGGKRHAATFNLNDIREGKTEDPQIYGNDIVVVDTSSGNRFIQNFQGVFP
HHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCEEECCEEEEEECCCCCHHHHHHHHHHH
LLGFLAW
HHHHHCC
>Mature Secondary Structure
MMGADVRPARIRNRLVAIPRSPIMRRHLTSLAAAALLASAAPTLAFAASKLPPPDSAGLL
CCCCCCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCC
SPAAADYRIGAQDVLEVNVFGIEELKREVQVNAGGKVILPLVGELQAGGRTPGEFSEDVE
CCCCCCCCCCHHHEEEEEEECHHHHHHHHEECCCCEEEEEEHHHHCCCCCCCCCHHHHHH
AALKAKYMKDPQVIVTVKNAQSQRVTIDGAVNKPGVYPLSGPTTLLQAVSLGGGPDQKLA
HHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEEECCCHHHHHHHHHCCCCCCHHHH
NVKKVAVFRQVGGKRHAATFNLNDIREGKTEDPQIYGNDIVVVDTSSGNRFIQNFQGVFP
HHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCEEECCEEEEEECCCCCHHHHHHHHHHH
LLGFLAW
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]