| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is fhuA [C]
Identifier: 197104598
GI number: 197104598
Start: 1295501
End: 1297336
Strand: Direct
Name: fhuA [C]
Synonym: PHZ_c1132
Alternate gene names: 197104598
Gene position: 1295501-1297336 (Clockwise)
Preceding gene: 197104596
Following gene: 197104601
Centisome position: 32.42
GC content: 76.03
Gene sequence:
>1836_bases GTGTCCCTTTTCCGACGCACGGGCAGCGGGGCGGCCAATCCGACGACGCAGGGCCTGTCGCTTCGCTCCATCGCCCCCTC CGGCGCCGGACGCGCGCTGGTGACCCTGGACGGCGCCCCGCAGAACGATCCCTTCGGCGGCTGGGTGATCTGGAGCGCGC TCCCGCCCGAGGGGCTGGACGGGGCGACGGTGGTGCGCGGCGCGGGCGCGGGGCCCTATGGCGCCGGCGCCCTGACCGGC GTGGTGGCGCTGCAGGAGCGCGGCGCGCGGGACGGCCTGGCCGCATTCGACATTTCGGCGGGCGAGCGCGACAGCTACCG GGCCGCCATCGCGGGCGGGACCGAGCATGTCCTGCTGACCGCGGCGGCGTCCAAGACCGACGGCTACTACGCCGTGCGCG GGCTGCAGCGCGGCGCGGCCGACGAGCGCGTGTCGCTGGAGGACGTCTCGGGCGCCCTGCGCGTCCAGCACGAGATCGGC GGCGTGGAGGCCGCGGCCCGGGTCTCGGCCTATCGCGAGATCCGCGGCGCCGGGCTGGTGGGCGCGCGCTCGGTCGCGTC GGGCCAGTCGGCGACCGTCACCCTGGCGCGTTCGGCGGAGGCAGGCGTCGGCGGCTGGCGGCTGCAGGCCTGGGTGCGCG AGAGCGACCTGAAGAACAGCTCGGCGGCGGTGGCCGCGGGCCGGACGGGCACGACCCCGGCCAACGACCAGTACGAGACG CCGGCCACGGGCTACGGCGTCAACGCCGCCCTGCAGGGCCGGATGGCGGCGGTGGCGTGGGAGGTCGGCGCCGACCTGCG CTGGACCGACGGGCGAGTTCGCGAGCGGTTCCGCAACCTGGGGGCCGGATTCACCCGTCACCGGGAGGCCGGCGGCGAGA CCTTCGTCGGCGGCGCCTATGTCGAGGCGGCCTACGACAGCGGCCCCTGGCTGCTGACCGGCGGGGCCCGGATCGACCGG TCGGAATCGAGCGGCGCGATCCGCCGCGAGCGGGACCTCCAGACGGGCGAGGTCCTGCTGGACCTGCGGCCGGACGGCTC GTCCGAGACCACGCCGACGGCCCGGTTCGGCGCCCGCTACGACCTGGCTGACGGCCGCTACGTCCGGGCCGCCGCCTATG CCGGCTTCCGCCCGCCGACGCTGAACGAACTGCACCGGCCGTTCCGGGTCGGCAACGACATCACCGAGGCGAACGCCGCG CTGAAGCCCGAGACGCTGCAGGGTCTGGAAGCCGGGGTCGGCGGCGAGGGACCGGTGCGCTGGAGCACGACGCTGTTCTG GAACCGGATCAAGGACCCGATCACCAACGTCACCATCGGCTTCGGGCCGGGCGCCTTCCCGACCGCCGGCTTCGTGCCGG CGGGCGGGGTCCTGCGCCAGCGGCGCAACGCCGGCGAGATCGAGGCCTGGGGCGTCGAGGGCGAGGCGTCCGGCGATCTG GGCGCGACCGCGTCCTGGCGGCTCGCGGCCGCCTACACCGACGCCGAGGTGGACGGGGGCGGCGCCGCCCCGCAGCTCAC CGGCCTGCGCCCGGCCCAGACGCCGAAGTGGACGGTCACCGCCGGGGCCGACTGGCGCCCGCTCGCCCGCCTGACCCTGG CGGCGGACCTGCGCTACGAGAGCGCCCGCTGGGAGGACGACCTCAACAGCCGCCGCCTGAACGCGGGCGTTCAGCTCGAC GCGCGGGCGGCCTGGCGGCTGTCGGACACCGCCGAGGTGTACCTGGCGGCCGAGAACCTGACCGACGAGGAGCTCGAGAT CGGCGAGACCGCCGACGGCGTCGAGAGCTACCTGGCCCCGCGGACGATCCGCGTGGGCTTCTCGATCCGGCGCTAA
Upstream 100 bases:
>100_bases GCCGCTCGGCGGCGAGGCGGCCTTCAGCGCGGTGCAGATCGACGCCCTGGAGCTGAAGGAGACGCCGCGGCTGGACGAGG CGCTGAAGCGGGCGCCCGGC
Downstream 100 bases:
>100_bases TCCTTCTTCGGGGCCGCCGCCCCGGCGACGAGGGCGGCGAACTCGGGCCGGATGTTCTCGGCGCCCTTCTCGGCGATGTG CTGGGCGATGCGCGCGCCCA
Product: TonB-dependent receptor for transport vitamin B12
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Receptor; NB-Dependent Receptor Domain Protein; NB Dependent Receptor; Iron-Regulated Outer Membrane Virulence Protein; NB-Dependent Receptor For Transport Vitamin B; NB-Dependent Receptor-Like Protein
Number of amino acids: Translated: 611; Mature: 610
Protein sequence:
>611_residues MSLFRRTGSGAANPTTQGLSLRSIAPSGAGRALVTLDGAPQNDPFGGWVIWSALPPEGLDGATVVRGAGAGPYGAGALTG VVALQERGARDGLAAFDISAGERDSYRAAIAGGTEHVLLTAAASKTDGYYAVRGLQRGAADERVSLEDVSGALRVQHEIG GVEAAARVSAYREIRGAGLVGARSVASGQSATVTLARSAEAGVGGWRLQAWVRESDLKNSSAAVAAGRTGTTPANDQYET PATGYGVNAALQGRMAAVAWEVGADLRWTDGRVRERFRNLGAGFTRHREAGGETFVGGAYVEAAYDSGPWLLTGGARIDR SESSGAIRRERDLQTGEVLLDLRPDGSSETTPTARFGARYDLADGRYVRAAAYAGFRPPTLNELHRPFRVGNDITEANAA LKPETLQGLEAGVGGEGPVRWSTTLFWNRIKDPITNVTIGFGPGAFPTAGFVPAGGVLRQRRNAGEIEAWGVEGEASGDL GATASWRLAAAYTDAEVDGGGAAPQLTGLRPAQTPKWTVTAGADWRPLARLTLAADLRYESARWEDDLNSRRLNAGVQLD ARAAWRLSDTAEVYLAAENLTDEELEIGETADGVESYLAPRTIRVGFSIRR
Sequences:
>Translated_611_residues MSLFRRTGSGAANPTTQGLSLRSIAPSGAGRALVTLDGAPQNDPFGGWVIWSALPPEGLDGATVVRGAGAGPYGAGALTG VVALQERGARDGLAAFDISAGERDSYRAAIAGGTEHVLLTAAASKTDGYYAVRGLQRGAADERVSLEDVSGALRVQHEIG GVEAAARVSAYREIRGAGLVGARSVASGQSATVTLARSAEAGVGGWRLQAWVRESDLKNSSAAVAAGRTGTTPANDQYET PATGYGVNAALQGRMAAVAWEVGADLRWTDGRVRERFRNLGAGFTRHREAGGETFVGGAYVEAAYDSGPWLLTGGARIDR SESSGAIRRERDLQTGEVLLDLRPDGSSETTPTARFGARYDLADGRYVRAAAYAGFRPPTLNELHRPFRVGNDITEANAA LKPETLQGLEAGVGGEGPVRWSTTLFWNRIKDPITNVTIGFGPGAFPTAGFVPAGGVLRQRRNAGEIEAWGVEGEASGDL GATASWRLAAAYTDAEVDGGGAAPQLTGLRPAQTPKWTVTAGADWRPLARLTLAADLRYESARWEDDLNSRRLNAGVQLD ARAAWRLSDTAEVYLAAENLTDEELEIGETADGVESYLAPRTIRVGFSIRR >Mature_610_residues SLFRRTGSGAANPTTQGLSLRSIAPSGAGRALVTLDGAPQNDPFGGWVIWSALPPEGLDGATVVRGAGAGPYGAGALTGV VALQERGARDGLAAFDISAGERDSYRAAIAGGTEHVLLTAAASKTDGYYAVRGLQRGAADERVSLEDVSGALRVQHEIGG VEAAARVSAYREIRGAGLVGARSVASGQSATVTLARSAEAGVGGWRLQAWVRESDLKNSSAAVAAGRTGTTPANDQYETP ATGYGVNAALQGRMAAVAWEVGADLRWTDGRVRERFRNLGAGFTRHREAGGETFVGGAYVEAAYDSGPWLLTGGARIDRS ESSGAIRRERDLQTGEVLLDLRPDGSSETTPTARFGARYDLADGRYVRAAAYAGFRPPTLNELHRPFRVGNDITEANAAL KPETLQGLEAGVGGEGPVRWSTTLFWNRIKDPITNVTIGFGPGAFPTAGFVPAGGVLRQRRNAGEIEAWGVEGEASGDLG ATASWRLAAAYTDAEVDGGGAAPQLTGLRPAQTPKWTVTAGADWRPLARLTLAADLRYESARWEDDLNSRRLNAGVQLDA RAAWRLSDTAEVYLAAENLTDEELEIGETADGVESYLAPRTIRVGFSIRR
Specific function: This Receptor Binds The Ferrichrome-Iron Ligand. It Interacts With The Tonb Protein, Which Is Responsible For Energy Coupling Of The Ferrichrome-Promoted Iron Transport System. Acts As A Receptor For Bacteriophage T5 As Well As T1, Phi80 And Colicin M. B
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Outer Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64180; Mature: 64048
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFRRTGSGAANPTTQGLSLRSIAPSGAGRALVTLDGAPQNDPFGGWVIWSALPPEGLD CCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCC GATVVRGAGAGPYGAGALTGVVALQERGARDGLAAFDISAGERDSYRAAIAGGTEHVLLT CCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEE AAASKTDGYYAVRGLQRGAADERVSLEDVSGALRVQHEIGGVEAAARVSAYREIRGAGLV EECCCCCCEEEEHHHHCCCCCCCCCHHHCCCEEEEEHHHCCHHHHHHHHHHHHHHCCCCC GARSVASGQSATVTLARSAEAGVGGWRLQAWVRESDLKNSSAAVAAGRTGTTPANDQYET CCHHHCCCCCEEEEEEECCCCCCCCEEEEEEHHHHCCCCCCCEEECCCCCCCCCCCCCCC PATGYGVNAALQGRMAAVAWEVGADLRWTDGRVRERFRNLGAGFTRHREAGGETFVGGAY CCCCCCCCHHHCCCEEEEEEECCCCEEECCHHHHHHHHHHCCCCHHHHHCCCCEEECCEE VEAAYDSGPWLLTGGARIDRSESSGAIRRERDLQTGEVLLDLRPDGSSETTPTARFGARY EEEEECCCCEEEECCCEECCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCHHCCCEE DLADGRYVRAAAYAGFRPPTLNELHRPFRVGNDITEANAALKPETLQGLEAGVGGEGPVR ECCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCE WSTTLFWNRIKDPITNVTIGFGPGAFPTAGFVPAGGVLRQRRNAGEIEAWGVEGEASGDL EEHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCC GATASWRLAAAYTDAEVDGGGAAPQLTGLRPAQTPKWTVTAGADWRPLARLTLAADLRYE CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHEEEEEECCCCC SARWEDDLNSRRLNAGVQLDARAAWRLSDTAEVYLAAENLTDEELEIGETADGVESYLAP CCCCCCCCCCCEECCCEEEECCEEEEECCCEEEEEEECCCCCCHHCCCCCHHHHHHHHCC RTIRVGFSIRR CEEEECEEECC >Mature Secondary Structure SLFRRTGSGAANPTTQGLSLRSIAPSGAGRALVTLDGAPQNDPFGGWVIWSALPPEGLD CCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCC GATVVRGAGAGPYGAGALTGVVALQERGARDGLAAFDISAGERDSYRAAIAGGTEHVLLT CCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEE AAASKTDGYYAVRGLQRGAADERVSLEDVSGALRVQHEIGGVEAAARVSAYREIRGAGLV EECCCCCCEEEEHHHHCCCCCCCCCHHHCCCEEEEEHHHCCHHHHHHHHHHHHHHCCCCC GARSVASGQSATVTLARSAEAGVGGWRLQAWVRESDLKNSSAAVAAGRTGTTPANDQYET CCHHHCCCCCEEEEEEECCCCCCCCEEEEEEHHHHCCCCCCCEEECCCCCCCCCCCCCCC PATGYGVNAALQGRMAAVAWEVGADLRWTDGRVRERFRNLGAGFTRHREAGGETFVGGAY CCCCCCCCHHHCCCEEEEEEECCCCEEECCHHHHHHHHHHCCCCHHHHHCCCCEEECCEE VEAAYDSGPWLLTGGARIDRSESSGAIRRERDLQTGEVLLDLRPDGSSETTPTARFGARY EEEEECCCCEEEECCCEECCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCHHCCCEE DLADGRYVRAAAYAGFRPPTLNELHRPFRVGNDITEANAALKPETLQGLEAGVGGEGPVR ECCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCE WSTTLFWNRIKDPITNVTIGFGPGAFPTAGFVPAGGVLRQRRNAGEIEAWGVEGEASGDL EEHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCC GATASWRLAAAYTDAEVDGGGAAPQLTGLRPAQTPKWTVTAGADWRPLARLTLAADLRYE CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHEEEEEECCCCC SARWEDDLNSRRLNAGVQLDARAAWRLSDTAEVYLAAENLTDEELEIGETADGVESYLAP CCCCCCCCCCCEECCCEEEECCEEEEECCCEEEEEEECCCCCCHHCCCCCHHHHHHHHCC RTIRVGFSIRR CEEEECEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA