BacMap

Definition	Phenylobacterium zucineum HLK1, complete genome.
Accession	NC_011144
Length	3,996,255

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The map label for this gene is yohF [C]

Identifier: 197104597

GI number: 197104597

Start: 1294532

End: 1295272

Strand: Reverse

Name: yohF [C]

Synonym: PHZ_c1131

Alternate gene names: 197104597

Gene position: 1295272-1294532 (Counterclockwise)

Preceding gene: 197104599

Following gene: 197104593

Centisome position: 32.41

GC content: 72.6

Gene sequence:

>741_bases
ATGGGCAAGGTCGCGATCGTGACCGGCGCGGGCAGCGGGATCGGCCGGGCTGTGGCCGTCGCGCTACTGGACGCCGGCTG
GCGGGTGGCGCTGGCGGGGCGGCGCGCGGACGCGCTGGCGGAGACCGCCGCCCTCTCGGCCGGCGAGTCCCTGGCGATCC
CGACCGACGTGGCGGACGAGGCTGCGGTGGATGCGCTGTTCGAGCAGACGAAGGCCCGCTTCAGCCGTCTGGACCTGCTG
TTCAACAACGCCGGGACCGGCGCCCCGCCCGTCCCCATCGAGGACCACGCGCTGGACCACTGGAAGCGCGTCGTGGACGT
GAACCTCACCGGCGCCTTCCTGTGCACCCGCGCGGCCTTCCGGCTGATGAAGGCCCAGGCGCCGCGCGGCGGGCGGATCA
TCAACAACGGCTCGATCGCCGCCCACGCCCCGCGCCCGCTCACCATCGCCTACAGCGCCACGAAGGCGGCGATGACCGGC
CTGACCCGCTCCACCTCGCTGGACGGGCGCGCCTACGACATCGCCTGCGGCCAGATCGACATCGGCAACGCCGAGACGCC
GATGACCCGCGGCGTCGTCAGGGGCACGCTGCAGGCCGACGGCGCGATGAAGCCCGAGCCCTATCTGGACGTGCGCCACG
TGGCCGAAGCGGTCCTGTACATGGCCGGCCTGCCGCTGGAGGCCAACGTGCAGTTCATGACCGTGATGGCGACGAAGATG
CCGTACATCGGCCGCGGCTGA

Upstream 100 bases:

>100_bases
CTTCGACCTGGGTGGCGGGCGGCGGCGGCAGATCCGGCATGTTTCCTCGTATTTCTGGTATGGCCCGGGCCTGGGCTAAA
CAGCGGGGATGGAGAGCGCA

Downstream 100 bases:

>100_bases
CCAATCCGGCGGCGGGGGCGCCCACCACCGCGGCGCCCCCCACGGCGCCCATGTGAATTTTTCGCTGCACCGCAGCATTC
CACTTGCGGACTGACGCCCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MGKVAIVTGAGSGIGRAVAVALLDAGWRVALAGRRADALAETAALSAGESLAIPTDVADEAAVDALFEQTKARFSRLDLL
FNNAGTGAPPVPIEDHALDHWKRVVDVNLTGAFLCTRAAFRLMKAQAPRGGRIINNGSIAAHAPRPLTIAYSATKAAMTG
LTRSTSLDGRAYDIACGQIDIGNAETPMTRGVVRGTLQADGAMKPEPYLDVRHVAEAVLYMAGLPLEANVQFMTVMATKM
PYIGRG

Sequences:

>Translated_246_residues
MGKVAIVTGAGSGIGRAVAVALLDAGWRVALAGRRADALAETAALSAGESLAIPTDVADEAAVDALFEQTKARFSRLDLL
FNNAGTGAPPVPIEDHALDHWKRVVDVNLTGAFLCTRAAFRLMKAQAPRGGRIINNGSIAAHAPRPLTIAYSATKAAMTG
LTRSTSLDGRAYDIACGQIDIGNAETPMTRGVVRGTLQADGAMKPEPYLDVRHVAEAVLYMAGLPLEANVQFMTVMATKM
PYIGRG
>Mature_245_residues
GKVAIVTGAGSGIGRAVAVALLDAGWRVALAGRRADALAETAALSAGESLAIPTDVADEAAVDALFEQTKARFSRLDLLF
NNAGTGAPPVPIEDHALDHWKRVVDVNLTGAFLCTRAAFRLMKAQAPRGGRIINNGSIAAHAPRPLTIAYSATKAAMTGL
TRSTSLDGRAYDIACGQIDIGNAETPMTRGVVRGTLQADGAMKPEPYLDVRHVAEAVLYMAGLPLEANVQFMTVMATKMP
YIGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=30.8943089430894, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI15277342, Length=236, Percent_Identity=33.8983050847458, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI31542939, Length=172, Percent_Identity=35.4651162790698, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI224922801, Length=185, Percent_Identity=35.1351351351351, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40254992, Length=228, Percent_Identity=29.8245614035088, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI209862901, Length=199, Percent_Identity=29.1457286432161, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI19923983, Length=199, Percent_Identity=29.1457286432161, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI19923817, Length=190, Percent_Identity=32.1052631578947, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI4504505, Length=250, Percent_Identity=30.8, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI59889578, Length=162, Percent_Identity=30.8641975308642, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7706318, Length=165, Percent_Identity=29.6969696969697, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4758504, Length=177, Percent_Identity=32.2033898305085, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI83715985, Length=177, Percent_Identity=32.2033898305085, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI1788459, Length=216, Percent_Identity=32.4074074074074, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787820, Length=250, Percent_Identity=29.6, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789057, Length=199, Percent_Identity=34.1708542713568, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787335, Length=199, Percent_Identity=30.6532663316583, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI2367175, Length=213, Percent_Identity=29.1079812206573, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082160, Length=191, Percent_Identity=31.9371727748691, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=28.0612244897959, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786812, Length=192, Percent_Identity=34.375, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082100, Length=211, Percent_Identity=30.3317535545024, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789378, Length=164, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789208, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787905, Length=170, Percent_Identity=30, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=195, Percent_Identity=35.8974358974359, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=35.5, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=180, Percent_Identity=32.7777777777778, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=178, Percent_Identity=35.9550561797753, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=204, Percent_Identity=35.2941176470588, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=191, Percent_Identity=32.4607329842932, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=28.7128712871287, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=180, Percent_Identity=32.2222222222222, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=176, Percent_Identity=32.3863636363636, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=175, Percent_Identity=33.7142857142857, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=175, Percent_Identity=32.5714285714286, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=179, Percent_Identity=30.7262569832402, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=177, Percent_Identity=32.7683615819209, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=221, Percent_Identity=31.6742081447964, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=176, Percent_Identity=29.5454545454545, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=223, Percent_Identity=30.4932735426009, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=178, Percent_Identity=33.1460674157303, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=177, Percent_Identity=29.3785310734463, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=219, Percent_Identity=28.7671232876712, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=196, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=235, Percent_Identity=28.5106382978723, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=179, Percent_Identity=29.608938547486, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=180, Percent_Identity=29.4444444444444, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=225, Percent_Identity=27.1111111111111, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=226, Percent_Identity=28.3185840707965, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=189, Percent_Identity=30.1587301587302, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=230, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=178, Percent_Identity=29.7752808988764, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI18859837, Length=244, Percent_Identity=30.327868852459, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI17737361, Length=194, Percent_Identity=34.5360824742268, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI23397609, Length=231, Percent_Identity=33.7662337662338, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=30.241935483871, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI21357041, Length=216, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007236, Length=253, Percent_Identity=26.4822134387352, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=30.3643724696356, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=30.7377049180328, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21355319, Length=171, Percent_Identity=30.9941520467836, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007238, Length=171, Percent_Identity=32.1637426900585, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24641232, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=28.8, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648944, Length=232, Percent_Identity=29.7413793103448, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24639444, Length=189, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=28.1124497991968, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24643142, Length=167, Percent_Identity=34.1317365269461, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641388, Length=253, Percent_Identity=28.8537549407115, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24663911, Length=247, Percent_Identity=27.1255060728745, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007232, Length=180, Percent_Identity=31.6666666666667, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665243, Length=167, Percent_Identity=32.9341317365269, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331218, Length=167, Percent_Identity=32.9341317365269, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=203, Percent_Identity=28.0788177339901, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25727; Mature: 25596

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKVAIVTGAGSGIGRAVAVALLDAGWRVALAGRRADALAETAALSAGESLAIPTDVADE
CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEECCCCCCHH
AAVDALFEQTKARFSRLDLLFNNAGTGAPPVPIEDHALDHWKRVVDVNLTGAFLCTRAAF
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHEEEECCHHHHHHHHHHH
RLMKAQAPRGGRIINNGSIAAHAPRPLTIAYSATKAAMTGLTRSTSLDGRAYDIACGQID
HHHHHCCCCCCEEEECCCEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCEEEEEECEEE
IGNAETPMTRGVVRGTLQADGAMKPEPYLDVRHVAEAVLYMAGLPLEANVQFMTVMATKM
CCCCCCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
PYIGRG
CCCCCC
>Mature Secondary Structure 
GKVAIVTGAGSGIGRAVAVALLDAGWRVALAGRRADALAETAALSAGESLAIPTDVADE
CCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEECCCCCCHH
AAVDALFEQTKARFSRLDLLFNNAGTGAPPVPIEDHALDHWKRVVDVNLTGAFLCTRAAF
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHEEEECCHHHHHHHHHHH
RLMKAQAPRGGRIINNGSIAAHAPRPLTIAYSATKAAMTGLTRSTSLDGRAYDIACGQID
HHHHHCCCCCCEEEECCCEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCEEEEEECEEE
IGNAETPMTRGVVRGTLQADGAMKPEPYLDVRHVAEAVLYMAGLPLEANVQFMTVMATKM
CCCCCCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
PYIGRG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]