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The map label for this gene is fliF [H]

Identifier: 197104328

GI number: 197104328

Start: 954148

End: 955794

Strand: Reverse

Name: fliF [H]

Synonym: PHZ_c0862

Alternate gene names: 197104328

Gene position: 955794-954148 (Counterclockwise)

Preceding gene: 197104329

Following gene: 197104327

Centisome position: 23.92

GC content: 70.55

Gene sequence:

>1647_bases
GTGAACCAGTTGCTCGCGGCCATTCAGCGGTTCGGGATCGGGCGTCTGGCCGCCATCCTGGGGATCGGCGCGGGACTGGC
GGCCGTGCTGTTCGCCATGACCATGGGCCTGGGCGAGCCCAAGGCCCTGCTCTATTCCAACCTCGACCTCAAGGAAGCCG
GCTCGATCACCCAGGCGCTGGACCAGGCCGGGATCAAGTACGAGGTGAAGGGCGACGGCTCCACCATCCTCGTCGGCCGC
GACAAGGTGGCAGCCACCCGCCTGATGCTGTCGTCGCGCGGCCTGCCGACCGCCGGTTCGGTCGGCTACGAGATCTTCGA
CGACGCCAAGGCCCTGGGCCAGACCGATTTCGTCCAGCAGCTCAACCGCCAGCGCGCCCTGGAAGGCGAACTGGCCCGCA
CCATCCGCAGCCTCGACGGCATCACCTCGGCGCGGGTGCACCTGGTGCTGCCCAAGCGCCAGCTCTTCCAGGAGGAGGCC
GAGCAGCCCTCGGCCTCGGTCAACATCGGAGTCGGCGGCCGCGCCCCCAGCCCCGAACAGGTGCGCGCGATCCAGAACCT
CATCGCCGGCGCCGTGCCCAACCTGCGGCCCGACCGCGTGACCGTGGTGGACCAGCACGCCAAGACGCTGTCCGGCGGCG
ACACCGGCATGGCCGCCGAGGCCGACAGCCGCAAGTCCGAGGTCGAGCAGCGCATCGCCAAGCAGGTGAAGAACCTGATC
GAGGGCGTCGTCGGCCCCGGCAAGGCGCGCGTCAACGTCTCCGCCGAGCTGGAACTGGCGCGGGTCACCGTGCAGCAGGA
GACCTTCGATCCCGACGGCCAGGTGATCCGCTCGGAATCCACCACCGACGAGAACAGCCGCGAGAACCAGGAAGACGGCG
CGGGCCAAGCCGGCGTGGCCGGGAACCTGCCCGGCGCCGCGGCGCTGGGCGGCGGCGGCCTGGTCGGCTCGCAGAGCGGG
CGCCAGGAATCCACCACCAACTACGAGATCTCCAAGACCGTCCGCACCGAGGTGCAGGAGCCCGGCCAGGTGAAGCGCCT
GTCGGTCGCCGTCGCGGTGGACGGCGTCACCGCCATCGGCGCCGACGGCCAGCCGGGCGCCTACACGCCGCGCACCGCCG
AGGAGATGCAGCGCATCGAGCAGCTGGTCCGCACCGCCGTCGGCTTCAACCAGGACCGCGGCGACCAGGTCAGCGTCATC
AACGTCCGCTTCCCCACGCCCGACACGGTGGGCGGCGTCGAGGCGGCGAACCCGCTGATGGGCTTCGATAAGAACGACAT
CATGCGCGCGGTCGAGATCGGGGTGATGGCGATCGTCGGGATCCTGATGTTGATCTTCGTCGCCCGGCCGCTGCTGAAGA
GCGCGACCGGCGGCGGCGGGGGCGGCCTGCCGATGATGATGGGCGGCCCGCAGGTGACCCGCGTCGTCACCACGGCCGAC
GGCCAGCCGATGCAGATCGCCGCCGACGGCACGGCCCAGCTCGCCCTGCCCGGCCCCGGTCATACCGAACTGGAGAGCAA
GATCGACATGGCCCGCATCGAGGGCCAGGTGAAGGCCAGCTCGGTGAAGCGCGTGGCCGAGTTCGTCGAGAAGCATCCGG
AGGAGTCGGTCGCGATCCTCCGTAGCTGGCTGCACGAGACGCCATGA

Upstream 100 bases:

>100_bases
TCCTTAAACCCGCGTTTACCAACGACTGGGTAATTCCTGCCTAGTGGAGGGCGGGAATGATTTGCCGCGCGCCCTCCGGA
GTTGGGGGAAGGACGCCCGC

Downstream 100 bases:

>100_bases
TCCGCGCGAAGGGCAAGAACGTCGCCGACGCGACCAAGCTGACCGGGCCGGAGAAGGCCGCGGTGGTGCTGCTCGCCCTC
GGCGAGGAGCACGCCGAGGT

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MNQLLAAIQRFGIGRLAAILGIGAGLAAVLFAMTMGLGEPKALLYSNLDLKEAGSITQALDQAGIKYEVKGDGSTILVGR
DKVAATRLMLSSRGLPTAGSVGYEIFDDAKALGQTDFVQQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEA
EQPSASVNIGVGGRAPSPEQVRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDTGMAAEADSRKSEVEQRIAKQVKNLI
EGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDGAGQAGVAGNLPGAAALGGGGLVGSQSG
RQESTTNYEISKTVRTEVQEPGQVKRLSVAVAVDGVTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVI
NVRFPTPDTVGGVEAANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLKSATGGGGGGLPMMMGGPQVTRVVTTAD
GQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEFVEKHPEESVAILRSWLHETP

Sequences:

>Translated_548_residues
MNQLLAAIQRFGIGRLAAILGIGAGLAAVLFAMTMGLGEPKALLYSNLDLKEAGSITQALDQAGIKYEVKGDGSTILVGR
DKVAATRLMLSSRGLPTAGSVGYEIFDDAKALGQTDFVQQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEA
EQPSASVNIGVGGRAPSPEQVRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDTGMAAEADSRKSEVEQRIAKQVKNLI
EGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDGAGQAGVAGNLPGAAALGGGGLVGSQSG
RQESTTNYEISKTVRTEVQEPGQVKRLSVAVAVDGVTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVI
NVRFPTPDTVGGVEAANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLKSATGGGGGGLPMMMGGPQVTRVVTTAD
GQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEFVEKHPEESVAILRSWLHETP
>Mature_548_residues
MNQLLAAIQRFGIGRLAAILGIGAGLAAVLFAMTMGLGEPKALLYSNLDLKEAGSITQALDQAGIKYEVKGDGSTILVGR
DKVAATRLMLSSRGLPTAGSVGYEIFDDAKALGQTDFVQQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEA
EQPSASVNIGVGGRAPSPEQVRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDTGMAAEADSRKSEVEQRIAKQVKNLI
EGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDGAGQAGVAGNLPGAAALGGGGLVGSQSG
RQESTTNYEISKTVRTEVQEPGQVKRLSVAVAVDGVTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVI
NVRFPTPDTVGGVEAANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLKSATGGGGGGLPMMMGGPQVTRVVTTAD
GQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEFVEKHPEESVAILRSWLHETP

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=419, Percent_Identity=35.3221957040573, Blast_Score=208, Evalue=7e-55,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 57565; Mature: 57565

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLLAAIQRFGIGRLAAILGIGAGLAAVLFAMTMGLGEPKALLYSNLDLKEAGSITQAL
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHCHHHHHH
DQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGSVGYEIFDDAKALGQTDFVQQ
HHCCCEEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
LNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQPSASVNIGVGGRAPSPEQ
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCCCEEEEECCCCCCCHHH
VRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDTGMAAEADSRKSEVEQRIAKQVKNLI
HHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDGAGQAGVA
HHCCCCCCEEEEEEEEEEEEEEEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
GNLPGAAALGGGGLVGSQSGRQESTTNYEISKTVRTEVQEPGQVKRLSVAVAVDGVTAIG
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEEEEEECCEEEEC
ADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVINVRFPTPDTVGGVEAANPLM
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
GFDKNDIMRAVEIGVMAIVGILMLIFVARPLLKSATGGGGGGLPMMMGGPQVTRVVTTAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECC
GQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEFVEKHPEESVAIL
CCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHH
RSWLHETP
HHHHHCCC
>Mature Secondary Structure
MNQLLAAIQRFGIGRLAAILGIGAGLAAVLFAMTMGLGEPKALLYSNLDLKEAGSITQAL
CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHCHHHHHH
DQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGSVGYEIFDDAKALGQTDFVQQ
HHCCCEEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHH
LNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQPSASVNIGVGGRAPSPEQ
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCCCEEEEECCCCCCCHHH
VRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDTGMAAEADSRKSEVEQRIAKQVKNLI
HHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDGAGQAGVA
HHCCCCCCEEEEEEEEEEEEEEEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
GNLPGAAALGGGGLVGSQSGRQESTTNYEISKTVRTEVQEPGQVKRLSVAVAVDGVTAIG
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEEEEEEEECCEEEEC
ADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVINVRFPTPDTVGGVEAANPLM
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
GFDKNDIMRAVEIGVMAIVGILMLIFVARPLLKSATGGGGGGLPMMMGGPQVTRVVTTAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECC
GQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEFVEKHPEESVAIL
CCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHH
RSWLHETP
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8002583; 11259647 [H]