| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197104316
Identifier: 197104316
GI number: 197104316
Start: 940014
End: 942389
Strand: Reverse
Name: 197104316
Synonym: PHZ_c0850
Alternate gene names: NA
Gene position: 942389-940014 (Counterclockwise)
Preceding gene: 197104317
Following gene: 197104315
Centisome position: 23.58
GC content: 76.73
Gene sequence:
>2376_bases ATGATCGCGCTGATCCTGGCGCTGGTGGCGGGCGGCTGGATCGCCTGGCTGTCCGAGCGCACGCCCGAGCCCCGTCCCGC CGACGCGCCGCCCGCCCGGTTCTCCGCCGCCAGGGCCATGGCCGATGTCGGGGTCATCGCCGCCCGCCCCCACCCCATGG GCTCGGCCGAGAACCGCCGCGTGCGGGACCACATCGTCGCCCGGATGCGCGCCCTGGGACTGGAAACGGAGATCCGTCGC GGTCCCGGCCTCTTCGACCGGAAGGTGCGGGGCGACCTGGCGATCGGCGGCGGAACGATCGAGAACATCGTCGGCGTCCT GCCGGGCCGCGACCGCGGCGCGTCCGCCGTGGCGGTGATGGCCCACTACGACAGCGTGCCCGGTTCACCCGGCGCGGCGG ACGACGCCTCGGGCGTGGCGGCGGCCCTGGAGATCGTCCGCGCGATCCGCGCCCGCGGCGTCCCGGCCCGCGACGTGGTC CTGCTGATCACCGACGGCGAGGAGTCGGGCCTGCTCGGCGCCGAAGCCTTCTTCCGGCGAGATCCCATGGCCGCGCGCAT CGGCTTCGTCGTCAACATGGAGGCGCGCGGCGGCGCCGGCCGGGCGCAGATGTTCGAGACCGGGACCGGCAACGGCCAGA CGATCGCCCTCTACCGCCGCGCCGTGGCCGAGCCGGCGGCGGCCTCGCTGTCCACCTTCGTCTACGAGCACATGCCGAAC GGCACCGACTTCACCCTGCCGAAGGACGCCGGGCTGCCGGGGGTGAACCTGGCCTTCATCGGCCGGCAGTTCGACTACCA CTCGGCGACCTCCACGCCGGCCAACCTCGACAAGGGCTCCCTGCAGCACCTGGGCGACCAGGCCCTGGCCGTCACCCTGG CGACCGCCTTCGCCCAGGCCCTGCCCGAACCCGGCCCCGACCAGGTCTACAGCCAGGTCCCGGGCGGCGTCCTGATCGCC TATCCGACCTGGGCCGGCTGGCTGGTCCTGGTGGCGGCGGCCGCGCTGATCGCCCTGGGCGTGCTTCGGGCGCGGCGGAC GGACGGCCTGTCCGCCTGGGACGCGGCCCGCGGCGCGGCGGCGCTCCTGTTCGCCGTCCTGGGGGCCGCCGCCGTGCTGA CCCTTGCGCGTAAGGCGACCGGCGCCGGCGCGGGCCACTTCGAGCAGATGTGGCTGCTGGCCCAGGCGGTCCGCTGGGAG GCCGCGGTGCTGGTGCTCGCCCTGGGCTTCCTGCTGCTCGCCGCCGCCACCGCGTCCCGCGGGCGGCGGATGGTCGCGGC CCTGCCGGCCGCGGCCGGGATCGTCGCCTTCCTGCTGGACCGCCAGGACTATCTCACCCTGGGTCTCGGCCTCGCGGCCG GCGCCATCGGGCTCTTCGCGTACTGGCGGGCGTCGGCGCGCCCCGGCGCCTGGACCGGCGTGCTGCTGACGGGCCTGGCC CTGGCGGCCTTCCTGCAGGTTGCGGCTCCGACCACCGCCTATGTGGTCGCCTGGCCCCTCCTGGCCGCCGCCGTGGGCGC CGCGGCCACCGACATGGCCGCCCGGCGCGGCCCCGCGGCCCTCGCCGTCCTGGCGCTGCTGGCCGCCCTGACCCTCGGGT TCGCGGCCGGCTACGCCCACGCCGCCTACCTCAGCCTCGACCTGATGGCCCTGCAGGCGATGCCGGTGCTGATGGCGGCG CTGGCCCTCTGGCCCCTGGCCCAGCCCGCCGAGGGCGCGCCGCCGGCCCGGCTGCTGGGGCCGCTGCTGCTCGTGGCGGG CGCCGTGCTGGTGGCGGTGGTCCGCTTCGACGCTCCTTGGAGCGCGCGCCACCCTCAGCTCAGCTACGTCGTCTATCACG TGGACCAGGACGCCGGCAGCGCCTGGCGGACCAGCCTGGCCCCCGCCGGTCCCTGGGCGCGGCAGGTGTTGCGGGCCGAC GGCGGCGAGATCGTGCGGCGCGAACACTGGATGCAGCGCCAGCCTGCGCAGGCCGCCCCCGCCCGCATGGTCGCCGAGGC GCCGCCGCAGATCACCGTCACGCCGCTGCCGGACGGGCGGGTCAGCCTGAGGGCCGCACCCCCGCCCGGCGCCCGCCAGC TCGCGCTGCAGATCCGGCCCAGCGTCGCGGCGCGGATCGAGCAGGTCGGCGGCGTCGCCCGGCCGCTGGAGCTGAAGCCC GGCCGCTGGACGAAGGTGTGGTGGGAGGCCGAGCCGTCCGGCGTGGAGCTGGTCCTGCGCCCTGCCGCGCCCGGCGGCCT CGAGGTGCGCTACGCGGCGACGCTGGAGCGCTGGCCGGCGGGCGTGCGGCCGCCGCCCCCGCGCCCCGCCGACGTCATGG CCTTCCACACCTCGGATTCCACGGTCGTGACGGGCACGCGGCGCTTCACTTGGTGA
Upstream 100 bases:
>100_bases GAGAGTCACGGAACGCCCGCCCTCACCGGCGGGCGTTTTCGTTTGCGCGCCGCCGGGCTAGCCTGCCGAAAAGGGATCGG GGGAGACGGCCGTGGGCAGG
Downstream 100 bases:
>100_bases GCACGAGCCTCTATCGGGGAGCCATGAGCGACGTCGTCATCTATCACAACCCCGCCTGCGGGACCTCGCGCAACACGCTG GCCCTGCTGCGCGAGAAGGG
Product: peptidase, M20/M25/M40 family
Products: NA
Alternate protein names: Peptidase; M28 Family Peptidase; Aminopeptidase; Peptidase Family; Peptidase Family M
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MIALILALVAGGWIAWLSERTPEPRPADAPPARFSAARAMADVGVIAARPHPMGSAENRRVRDHIVARMRALGLETEIRR GPGLFDRKVRGDLAIGGGTIENIVGVLPGRDRGASAVAVMAHYDSVPGSPGAADDASGVAAALEIVRAIRARGVPARDVV LLITDGEESGLLGAEAFFRRDPMAARIGFVVNMEARGGAGRAQMFETGTGNGQTIALYRRAVAEPAAASLSTFVYEHMPN GTDFTLPKDAGLPGVNLAFIGRQFDYHSATSTPANLDKGSLQHLGDQALAVTLATAFAQALPEPGPDQVYSQVPGGVLIA YPTWAGWLVLVAAAALIALGVLRARRTDGLSAWDAARGAAALLFAVLGAAAVLTLARKATGAGAGHFEQMWLLAQAVRWE AAVLVLALGFLLLAAATASRGRRMVAALPAAAGIVAFLLDRQDYLTLGLGLAAGAIGLFAYWRASARPGAWTGVLLTGLA LAAFLQVAAPTTAYVVAWPLLAAAVGAAATDMAARRGPAALAVLALLAALTLGFAAGYAHAAYLSLDLMALQAMPVLMAA LALWPLAQPAEGAPPARLLGPLLLVAGAVLVAVVRFDAPWSARHPQLSYVVYHVDQDAGSAWRTSLAPAGPWARQVLRAD GGEIVRREHWMQRQPAQAAPARMVAEAPPQITVTPLPDGRVSLRAAPPPGARQLALQIRPSVAARIEQVGGVARPLELKP GRWTKVWWEAEPSGVELVLRPAAPGGLEVRYAATLERWPAGVRPPPPRPADVMAFHTSDSTVVTGTRRFTW
Sequences:
>Translated_791_residues MIALILALVAGGWIAWLSERTPEPRPADAPPARFSAARAMADVGVIAARPHPMGSAENRRVRDHIVARMRALGLETEIRR GPGLFDRKVRGDLAIGGGTIENIVGVLPGRDRGASAVAVMAHYDSVPGSPGAADDASGVAAALEIVRAIRARGVPARDVV LLITDGEESGLLGAEAFFRRDPMAARIGFVVNMEARGGAGRAQMFETGTGNGQTIALYRRAVAEPAAASLSTFVYEHMPN GTDFTLPKDAGLPGVNLAFIGRQFDYHSATSTPANLDKGSLQHLGDQALAVTLATAFAQALPEPGPDQVYSQVPGGVLIA YPTWAGWLVLVAAAALIALGVLRARRTDGLSAWDAARGAAALLFAVLGAAAVLTLARKATGAGAGHFEQMWLLAQAVRWE AAVLVLALGFLLLAAATASRGRRMVAALPAAAGIVAFLLDRQDYLTLGLGLAAGAIGLFAYWRASARPGAWTGVLLTGLA LAAFLQVAAPTTAYVVAWPLLAAAVGAAATDMAARRGPAALAVLALLAALTLGFAAGYAHAAYLSLDLMALQAMPVLMAA LALWPLAQPAEGAPPARLLGPLLLVAGAVLVAVVRFDAPWSARHPQLSYVVYHVDQDAGSAWRTSLAPAGPWARQVLRAD GGEIVRREHWMQRQPAQAAPARMVAEAPPQITVTPLPDGRVSLRAAPPPGARQLALQIRPSVAARIEQVGGVARPLELKP GRWTKVWWEAEPSGVELVLRPAAPGGLEVRYAATLERWPAGVRPPPPRPADVMAFHTSDSTVVTGTRRFTW >Mature_791_residues MIALILALVAGGWIAWLSERTPEPRPADAPPARFSAARAMADVGVIAARPHPMGSAENRRVRDHIVARMRALGLETEIRR GPGLFDRKVRGDLAIGGGTIENIVGVLPGRDRGASAVAVMAHYDSVPGSPGAADDASGVAAALEIVRAIRARGVPARDVV LLITDGEESGLLGAEAFFRRDPMAARIGFVVNMEARGGAGRAQMFETGTGNGQTIALYRRAVAEPAAASLSTFVYEHMPN GTDFTLPKDAGLPGVNLAFIGRQFDYHSATSTPANLDKGSLQHLGDQALAVTLATAFAQALPEPGPDQVYSQVPGGVLIA YPTWAGWLVLVAAAALIALGVLRARRTDGLSAWDAARGAAALLFAVLGAAAVLTLARKATGAGAGHFEQMWLLAQAVRWE AAVLVLALGFLLLAAATASRGRRMVAALPAAAGIVAFLLDRQDYLTLGLGLAAGAIGLFAYWRASARPGAWTGVLLTGLA LAAFLQVAAPTTAYVVAWPLLAAAVGAAATDMAARRGPAALAVLALLAALTLGFAAGYAHAAYLSLDLMALQAMPVLMAA LALWPLAQPAEGAPPARLLGPLLLVAGAVLVAVVRFDAPWSARHPQLSYVVYHVDQDAGSAWRTSLAPAGPWARQVLRAD GGEIVRREHWMQRQPAQAAPARMVAEAPPQITVTPLPDGRVSLRAAPPPGARQLALQIRPSVAARIEQVGGVARPLELKP GRWTKVWWEAEPSGVELVLRPAAPGGLEVRYAATLERWPAGVRPPPPRPADVMAFHTSDSTVVTGTRRFTW
Specific function: Unknown
COG id: COG2234
COG function: function code R; Predicted aminopeptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI55749804, Length=310, Percent_Identity=30.3225806451613, Blast_Score=127, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17531383, Length=368, Percent_Identity=25.5434782608696, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI193204254, Length=364, Percent_Identity=26.0989010989011, Blast_Score=113, Evalue=4e-25, Organism=Saccharomyces cerevisiae, GI6319548, Length=287, Percent_Identity=26.1324041811847, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI45550463, Length=344, Percent_Identity=26.7441860465116, Blast_Score=135, Evalue=8e-32, Organism=Drosophila melanogaster, GI24655610, Length=344, Percent_Identity=26.7441860465116, Blast_Score=135, Evalue=1e-31, Organism=Drosophila melanogaster, GI45550464, Length=279, Percent_Identity=29.3906810035842, Blast_Score=121, Evalue=2e-27, Organism=Drosophila melanogaster, GI281363746, Length=279, Percent_Identity=29.3906810035842, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI28573701, Length=297, Percent_Identity=26.2626262626263, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI24655613, Length=424, Percent_Identity=25.7075471698113, Blast_Score=109, Evalue=1e-23, Organism=Drosophila melanogaster, GI24652989, Length=269, Percent_Identity=28.2527881040892, Blast_Score=106, Evalue=5e-23, Organism=Drosophila melanogaster, GI28573381, Length=252, Percent_Identity=28.968253968254, Blast_Score=106, Evalue=8e-23, Organism=Drosophila melanogaster, GI24652993, Length=294, Percent_Identity=24.8299319727891, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI24655630, Length=343, Percent_Identity=25.6559766763848, Blast_Score=100, Evalue=5e-21, Organism=Drosophila melanogaster, GI221330187, Length=267, Percent_Identity=27.7153558052434, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI221330185, Length=358, Percent_Identity=23.1843575418994, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI28573565, Length=350, Percent_Identity=25.7142857142857, Blast_Score=93, Evalue=7e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82643; Mature: 82643
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALILALVAGGWIAWLSERTPEPRPADAPPARFSAARAMADVGVIAARPHPMGSAENRR CHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCH VRDHIVARMRALGLETEIRRGPGLFDRKVRGDLAIGGGTIENIVGVLPGRDRGASAVAVM HHHHHHHHHHHHCCHHHHHCCCCCCCHHCCCCEEECCCHHHHHHHCCCCCCCCCCCEEEE AHYDSVPGSPGAADDASGVAAALEIVRAIRARGVPARDVVLLITDGEESGLLGAEAFFRR EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHC DPMAARIGFVVNMEARGGAGRAQMFETGTGNGQTIALYRRAVAEPAAASLSTFVYEHMPN CCCCEEEEEEEEEECCCCCCCCCEEECCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHCCC GTDFTLPKDAGLPGVNLAFIGRQFDYHSATSTPANLDKGSLQHLGDQALAVTLATAFAQA CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH LPEPGPDQVYSQVPGGVLIAYPTWAGWLVLVAAAALIALGVLRARRTDGLSAWDAARGAA CCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH ALLFAVLGAAAVLTLARKATGAGAGHFEQMWLLAQAVRWEAAVLVLALGFLLLAAATASR HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRRMVAALPAAAGIVAFLLDRQDYLTLGLGLAAGAIGLFAYWRASARPGAWTGVLLTGLA CCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LAAFLQVAAPTTAYVVAWPLLAAAVGAAATDMAARRGPAALAVLALLAALTLGFAAGYAH HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH AAYLSLDLMALQAMPVLMAALALWPLAQPAEGAPPARLLGPLLLVAGAVLVAVVRFDAPW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC SARHPQLSYVVYHVDQDAGSAWRTSLAPAGPWARQVLRADGGEIVRREHWMQRQPAQAAP CCCCCCEEEEEEEEECCCCCHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC ARMVAEAPPQITVTPLPDGRVSLRAAPPPGARQLALQIRPSVAARIEQVGGVARPLELKP HHHHHCCCCCEEEEECCCCCEEEEECCCCCHHEEEEEECCHHHHHHHHHCCCCCCCCCCC GRWTKVWWEAEPSGVELVLRPAAPGGLEVRYAATLERWPAGVRPPPPRPADVMAFHTSDS CCCEEEEEECCCCCCEEEEECCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCEEEEECCCC TVVTGTRRFTW EEEECCCCCCC >Mature Secondary Structure MIALILALVAGGWIAWLSERTPEPRPADAPPARFSAARAMADVGVIAARPHPMGSAENRR CHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCCCCCCCH VRDHIVARMRALGLETEIRRGPGLFDRKVRGDLAIGGGTIENIVGVLPGRDRGASAVAVM HHHHHHHHHHHHCCHHHHHCCCCCCCHHCCCCEEECCCHHHHHHHCCCCCCCCCCCEEEE AHYDSVPGSPGAADDASGVAAALEIVRAIRARGVPARDVVLLITDGEESGLLGAEAFFRR EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHC DPMAARIGFVVNMEARGGAGRAQMFETGTGNGQTIALYRRAVAEPAAASLSTFVYEHMPN CCCCEEEEEEEEEECCCCCCCCCEEECCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHCCC GTDFTLPKDAGLPGVNLAFIGRQFDYHSATSTPANLDKGSLQHLGDQALAVTLATAFAQA CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH LPEPGPDQVYSQVPGGVLIAYPTWAGWLVLVAAAALIALGVLRARRTDGLSAWDAARGAA CCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH ALLFAVLGAAAVLTLARKATGAGAGHFEQMWLLAQAVRWEAAVLVLALGFLLLAAATASR HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRRMVAALPAAAGIVAFLLDRQDYLTLGLGLAAGAIGLFAYWRASARPGAWTGVLLTGLA CCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LAAFLQVAAPTTAYVVAWPLLAAAVGAAATDMAARRGPAALAVLALLAALTLGFAAGYAH HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH AAYLSLDLMALQAMPVLMAALALWPLAQPAEGAPPARLLGPLLLVAGAVLVAVVRFDAPW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC SARHPQLSYVVYHVDQDAGSAWRTSLAPAGPWARQVLRADGGEIVRREHWMQRQPAQAAP CCCCCCEEEEEEEEECCCCCHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC ARMVAEAPPQITVTPLPDGRVSLRAAPPPGARQLALQIRPSVAARIEQVGGVARPLELKP HHHHHCCCCCEEEEECCCCCEEEEECCCCCHHEEEEEECCHHHHHHHHHCCCCCCCCCCC GRWTKVWWEAEPSGVELVLRPAAPGGLEVRYAATLERWPAGVRPPPPRPADVMAFHTSDS CCCEEEEEECCCCCCEEEEECCCCCCCEEEEEHHHHHCCCCCCCCCCCCCCEEEEECCCC TVVTGTRRFTW EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA