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The map label for this gene is rfaF [H]

Identifier: 197104039

GI number: 197104039

Start: 608622

End: 609590

Strand: Reverse

Name: rfaF [H]

Synonym: PHZ_c0573

Alternate gene names: 197104039

Gene position: 609590-608622 (Counterclockwise)

Preceding gene: 197104044

Following gene: 197104038

Centisome position: 15.25

GC content: 72.45

Gene sequence:

>969_bases
ATGGCGTCCGGCGGTTTCCCGATTCTCTTCATCACGGCCACGCGCATCGGCGACGCCGTGCTCTCGTCGGGCCTCGTCAA
GCGCCTGCACGACGAGATCCCCAACGCCCGCTTCACCATCGTGGCCGGCCCCGCGGCGGCGCCGCTCTTCGCCGAGGTCC
CGAACCTCGACCGCGTCATCGTGCTCGAGAAGAGCAAGTCCGGCGGCCACTGGTTCGACCTGTGGCGCCAGGTGCGCAGG
CGGCGCTGGGGCCTGGTCGTCGACTTGCGCGGCTCGGGGCTGTCGCGGTTCCTTCGGACGCGGCGGCGCGCCATCCATCG
CAAGAGCGCCGAGCCGCTGCACAAGGTGCTGGAGGCGGCGCGCACCCTGCGCATCGAGGACGAACCGGCGCCGCCGCACA
TCTTCACCTCGCCCGAGATCGAGGCGCAGGCCGCGGCGCTGACCGCCGGCGAGGGGCCGATCCTGGCCATGGCGCCGGCC
GCCAACTGGATCGGCAAGACCTGGCCGGCGGAGCGGTTCAGCCAGGTCGCCATGCGCCTGCTGCGCGAGGGCGAGCTCAA
GGGCGGCCGGCTGATGGTGGTCGGCGGCGCCGGCGACGCCAACGTCGTGAAGGCGATGCGCGACGCGGCCAAGAACCGGA
TCATCGACCTCACGGGCCAGGACCTGCTGGTGGCCCATGCGGCGCTGAAGCGGGCGCGGCTGTTCATCGGCAACGATTCC
GGCGCCATGCATCTGGCGGCCGCCGCCGGCGTCCCCACCATCGGCCTCTTCGGCCCCTCGGACGAGCGGCTGTACGCGCC
CTGGGGCGAGCACTGCCGGATCGTGCGCGGCGCCCGCGACCTCGACCAGATCCGCGCGGTCGACCCGGAACTCTCGCAGG
CCATCTGCCACATGATGGACCTGCCGGTGGAGAAGGTGGTAGGCGCGGCGGAGGAACTCCTGGCCGCCACCGAGGCCCCA
CATGCCTGA

Upstream 100 bases:

>100_bases
CGGCGATCACGGCCCGGCTCGTCAGCTGCACGATGGTCATGACGACAATTTGGGGCGCGCCGCTGTGGAGCGCCAGCCGC
CCCTTGGCTATGCAGTCTGC

Downstream 100 bases:

>100_bases
GACCTTCGACCTGATCGTGCGCGGCGGCGAGGTGGTGAACCACGCCGGACGCGGCCGCGCCGACATCGGCGTCCGCGGCG
GCAAGATCGCCGCCATCGGC

Product: ADP-heptose--LPS-heptosyl transferase II

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MASGGFPILFITATRIGDAVLSSGLVKRLHDEIPNARFTIVAGPAAAPLFAEVPNLDRVIVLEKSKSGGHWFDLWRQVRR
RRWGLVVDLRGSGLSRFLRTRRRAIHRKSAEPLHKVLEAARTLRIEDEPAPPHIFTSPEIEAQAAALTAGEGPILAMAPA
ANWIGKTWPAERFSQVAMRLLREGELKGGRLMVVGGAGDANVVKAMRDAAKNRIIDLTGQDLLVAHAALKRARLFIGNDS
GAMHLAAAAGVPTIGLFGPSDERLYAPWGEHCRIVRGARDLDQIRAVDPELSQAICHMMDLPVEKVVGAAEELLAATEAP
HA

Sequences:

>Translated_322_residues
MASGGFPILFITATRIGDAVLSSGLVKRLHDEIPNARFTIVAGPAAAPLFAEVPNLDRVIVLEKSKSGGHWFDLWRQVRR
RRWGLVVDLRGSGLSRFLRTRRRAIHRKSAEPLHKVLEAARTLRIEDEPAPPHIFTSPEIEAQAAALTAGEGPILAMAPA
ANWIGKTWPAERFSQVAMRLLREGELKGGRLMVVGGAGDANVVKAMRDAAKNRIIDLTGQDLLVAHAALKRARLFIGNDS
GAMHLAAAAGVPTIGLFGPSDERLYAPWGEHCRIVRGARDLDQIRAVDPELSQAICHMMDLPVEKVVGAAEELLAATEAP
HA
>Mature_321_residues
ASGGFPILFITATRIGDAVLSSGLVKRLHDEIPNARFTIVAGPAAAPLFAEVPNLDRVIVLEKSKSGGHWFDLWRQVRRR
RWGLVVDLRGSGLSRFLRTRRRAIHRKSAEPLHKVLEAARTLRIEDEPAPPHIFTSPEIEAQAAALTAGEGPILAMAPAA
NWIGKTWPAERFSQVAMRLLREGELKGGRLMVVGGAGDANVVKAMRDAAKNRIIDLTGQDLLVAHAALKRARLFIGNDSG
AMHLAAAAGVPTIGLFGPSDERLYAPWGEHCRIVRGARDLDQIRAVDPELSQAICHMMDLPVEKVVGAAEELLAATEAPH
A

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=343, Percent_Identity=24.4897959183673, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 34875; Mature: 34744

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGGFPILFITATRIGDAVLSSGLVKRLHDEIPNARFTIVAGPAAAPLFAEVPNLDRVI
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCEEE
VLEKSKSGGHWFDLWRQVRRRRWGLVVDLRGSGLSRFLRTRRRAIHRKSAEPLHKVLEAA
EEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
RTLRIEDEPAPPHIFTSPEIEAQAAALTAGEGPILAMAPAANWIGKTWPAERFSQVAMRL
HHEECCCCCCCCCEECCCCCCHHHHEEECCCCCEEEECCCCHHHCCCCCHHHHHHHHHHH
LREGELKGGRLMVVGGAGDANVVKAMRDAAKNRIIDLTGQDLLVAHAALKRARLFIGNDS
HHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHEEEEECCC
GAMHLAAAAGVPTIGLFGPSDERLYAPWGEHCRIVRGARDLDQIRAVDPELSQAICHMMD
CCEEEEECCCCCEEEEECCCCCEEECCCCHHHEEHHCCHHHHHHHCCCHHHHHHHHHHHC
LPVEKVVGAAEELLAATEAPHA
CCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASGGFPILFITATRIGDAVLSSGLVKRLHDEIPNARFTIVAGPAAAPLFAEVPNLDRVI
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCEEE
VLEKSKSGGHWFDLWRQVRRRRWGLVVDLRGSGLSRFLRTRRRAIHRKSAEPLHKVLEAA
EEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
RTLRIEDEPAPPHIFTSPEIEAQAAALTAGEGPILAMAPAANWIGKTWPAERFSQVAMRL
HHEECCCCCCCCCEECCCCCCHHHHEEECCCCCEEEECCCCHHHCCCCCHHHHHHHHHHH
LREGELKGGRLMVVGGAGDANVVKAMRDAAKNRIIDLTGQDLLVAHAALKRARLFIGNDS
HHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHEEEEECCC
GAMHLAAAAGVPTIGLFGPSDERLYAPWGEHCRIVRGARDLDQIRAVDPELSQAICHMMD
CCEEEEECCCCCEEEEECCCCCEEECCCCHHHEEHHCCHHHHHHHCCCHHHHHHHHHHHC
LPVEKVVGAAEELLAATEAPHA
CCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]