| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is arnT [H]
Identifier: 197103892
GI number: 197103892
Start: 434486
End: 436168
Strand: Reverse
Name: arnT [H]
Synonym: PHZ_c0426
Alternate gene names: 197103892
Gene position: 436168-434486 (Counterclockwise)
Preceding gene: 197103895
Following gene: 197103891
Centisome position: 10.91
GC content: 76.41
Gene sequence:
>1683_bases ATGACCCTCGAGCGCCTGATCGCCGACTGGAGCCGCGGGTGGCGCGGCCCGGCCGCGGCCGCCTTCATCGCCTTCGTGGC CGGCCTGCCCGGCCTCCTGGCCGTGCCGCCCCTGGACCGGGACGAATCGCGCTTCGCCCAGGCCACCGCCCAGATGCTGG AGAGCGGCGACTTCGTCGTCATCCGCTTCCAGGAGGACCCACGCTTCAAGAAGCCCGTCGGGATCCACTGGATGCAGGCG GCCTCGGTCGAGCTGGTCTCCAGCCCCGAGGCGCGCGAGATCTGGGCCTACCGCCTGCCCTCGCTGCTGGGCGCCATGCT GGCGGCCGCGGCCTGCGCCTGGGGCGCGGCGGCGTTCTTCGGCGGGCCGGCGGGGCTCGCCGCCGGCGCCCTGCTGGGCG CCACCTTCCTGCTCTCGACCGAGGCCTTCATCGCCAAGACCGACGCCATGCTGGCCGGCACGGTGACCCTGGCGCTCGCC GCTCTCGGGCGGCTCTACGCCGCCGCCCGCGACGGGCCGCCGGCCGGGAAGAGCGCCGAGCCGCTGTTCTGGGCGGGCCT GGCCCTCTCGGCCCTGGTGAAGGGGCCGGTGGGGCCGCTGGTCGTCGCCTTGACCCTCATCGTCCTGGCCCTCTGGGACC GCCGGCCCGCCTGGATCGCGCGCCTGCGCTGGTACTGGGGCCTGATCGCCTTCGCCGTCATCGTCGGACCCTGGGCCGGC GCCGTCACCGTCGCCACCGACGGCGGCTTCTGGACCGAGGCCATCGGCGCGGACCTCGCCCCCAAGCTGGCGGGCGGCCA GGAGACCCACGGCGCCCCGCCCGGCTACCACGCCCTGCTGACGCCGATCCTCGCCTTCCCGATCACCCTGCTGCTGCCGG CCGCCATCTTCGTCGCCTGGACGCGGCGGGCCGAGCCGGGCGTGCGGTTCGCGATCGCCTGGCTGGTCCCCGCCTGGCTG CTCTTCGAGCTGACCCCCACCAAGCTGCCGCACTATCCGCTGCCGGCCTACGGCGCCCTGGCCTGGCTGGCCGCCGCCGC CCTGGCCCAGCCGATCGGTCCCCGGCTGCGCTGGGCGGGCGCGGCCCTCGGGGTCGTGGTGGGCCTCGCCCTCGCCGTCG GCGTCATCTACCTGCTCAGCCTCTACGGCGGCGCCGCCGACGCCTGGGCCGCGGCCCTCGCCGCGGTCCTGCTCTCGGGC GCGGGCCTGGTCGGCGGCTATCTGATGATCAAGGGCGCCCCGCGCGGAGGCGTGGCGGCCGCCCTGGTGCTCGGCGTCCT CGGCCACGCCGCCCTCGCCGCCGGGCTCGTGCCCCGCCTGGGGCCGCTGTGGGTCTCGGCGCGGCTCGAGCGGGTGATGT CCGAACAGCGGCTGCTGCCCCGCCAGGGCGTAGCCGAGGCGCCGGTGGCCGTCGCCGGCTACGCCGAGCCCAGCCTGGTG TTCGCGCTCGGCACGCCCACCGAGCTGCACGGCGCCGACGAGGCCGCCCAGGCCATCGCCGAGAACCGCCCGGCGATCGT CGAGGCGCGCGAGGCCGAGGCGTTCCGCCAGGCGCTGGCCGCCCGCGGCGTCACCGCCCGCGAGGTGGCCCGGATCCGCG GCCTCAACTATTCCAAGGGCGACGAGGTGACCCTCGGCGTCTATGTCAGTCCCCAGACCGTGGTGCGGGAGGTCAGGCCA TGA
Upstream 100 bases:
>100_bases GGCCGTCCTTAGCGCGAGCCCGGGCCGGGCGCCACCATCGCCCCTTGTCCAGCGAAGCGAGGAAGCCTCCCCGCCGGGAC GGTTGTGCTATCACCGCCCC
Downstream 100 bases:
>100_bases GCCGGCGTATCGAGATCGTGGAAGTCGGGCCCCGCGACGGGCTGCAGAACGAGAAGACCCTGCTCGAGGTCGACCAGAAG CTCGAGATGATCCGCCGGCT
Product: 4-amino-4-deoxy-L-arabinose transferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 560; Mature: 559
Protein sequence:
>560_residues MTLERLIADWSRGWRGPAAAAFIAFVAGLPGLLAVPPLDRDESRFAQATAQMLESGDFVVIRFQEDPRFKKPVGIHWMQA ASVELVSSPEAREIWAYRLPSLLGAMLAAAACAWGAAAFFGGPAGLAAGALLGATFLLSTEAFIAKTDAMLAGTVTLALA ALGRLYAAARDGPPAGKSAEPLFWAGLALSALVKGPVGPLVVALTLIVLALWDRRPAWIARLRWYWGLIAFAVIVGPWAG AVTVATDGGFWTEAIGADLAPKLAGGQETHGAPPGYHALLTPILAFPITLLLPAAIFVAWTRRAEPGVRFAIAWLVPAWL LFELTPTKLPHYPLPAYGALAWLAAAALAQPIGPRLRWAGAALGVVVGLALAVGVIYLLSLYGGAADAWAAALAAVLLSG AGLVGGYLMIKGAPRGGVAAALVLGVLGHAALAAGLVPRLGPLWVSARLERVMSEQRLLPRQGVAEAPVAVAGYAEPSLV FALGTPTELHGADEAAQAIAENRPAIVEAREAEAFRQALAARGVTAREVARIRGLNYSKGDEVTLGVYVSPQTVVREVRP
Sequences:
>Translated_560_residues MTLERLIADWSRGWRGPAAAAFIAFVAGLPGLLAVPPLDRDESRFAQATAQMLESGDFVVIRFQEDPRFKKPVGIHWMQA ASVELVSSPEAREIWAYRLPSLLGAMLAAAACAWGAAAFFGGPAGLAAGALLGATFLLSTEAFIAKTDAMLAGTVTLALA ALGRLYAAARDGPPAGKSAEPLFWAGLALSALVKGPVGPLVVALTLIVLALWDRRPAWIARLRWYWGLIAFAVIVGPWAG AVTVATDGGFWTEAIGADLAPKLAGGQETHGAPPGYHALLTPILAFPITLLLPAAIFVAWTRRAEPGVRFAIAWLVPAWL LFELTPTKLPHYPLPAYGALAWLAAAALAQPIGPRLRWAGAALGVVVGLALAVGVIYLLSLYGGAADAWAAALAAVLLSG AGLVGGYLMIKGAPRGGVAAALVLGVLGHAALAAGLVPRLGPLWVSARLERVMSEQRLLPRQGVAEAPVAVAGYAEPSLV FALGTPTELHGADEAAQAIAENRPAIVEAREAEAFRQALAARGVTAREVARIRGLNYSKGDEVTLGVYVSPQTVVREVRP >Mature_559_residues TLERLIADWSRGWRGPAAAAFIAFVAGLPGLLAVPPLDRDESRFAQATAQMLESGDFVVIRFQEDPRFKKPVGIHWMQAA SVELVSSPEAREIWAYRLPSLLGAMLAAAACAWGAAAFFGGPAGLAAGALLGATFLLSTEAFIAKTDAMLAGTVTLALAA LGRLYAAARDGPPAGKSAEPLFWAGLALSALVKGPVGPLVVALTLIVLALWDRRPAWIARLRWYWGLIAFAVIVGPWAGA VTVATDGGFWTEAIGADLAPKLAGGQETHGAPPGYHALLTPILAFPITLLLPAAIFVAWTRRAEPGVRFAIAWLVPAWLL FELTPTKLPHYPLPAYGALAWLAAAALAQPIGPRLRWAGAALGVVVGLALAVGVIYLLSLYGGAADAWAAALAAVLLSGA GLVGGYLMIKGAPRGGVAAALVLGVLGHAALAAGLVPRLGPLWVSARLERVMSEQRLLPRQGVAEAPVAVAGYAEPSLVF ALGTPTELHGADEAAQAIAENRPAIVEAREAEAFRQALAARGVTAREVARIRGLNYSKGDEVTLGVYVSPQTVVREVRP
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=334, Percent_Identity=23.6526946107784, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 58315; Mature: 58184
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLERLIADWSRGWRGPAAAAFIAFVAGLPGLLAVPPLDRDESRFAQATAQMLESGDFVV CCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCEEE IRFQEDPRFKKPVGIHWMQAASVELVSSPEAREIWAYRLPSLLGAMLAAAACAWGAAAFF EEECCCCCCCCCCCCEEHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGPAGLAAGALLGATFLLSTEAFIAKTDAMLAGTVTLALAALGRLYAAARDGPPAGKSAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PLFWAGLALSALVKGPVGPLVVALTLIVLALWDRRPAWIARLRWYWGLIAFAVIVGPWAG CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC AVTVATDGGFWTEAIGADLAPKLAGGQETHGAPPGYHALLTPILAFPITLLLPAAIFVAW EEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH TRRAEPGVRFAIAWLVPAWLLFELTPTKLPHYPLPAYGALAWLAAAALAQPIGPRLRWAG HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH AALGVVVGLALAVGVIYLLSLYGGAADAWAAALAAVLLSGAGLVGGYLMIKGAPRGGVAA HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCEEEEECCCCCHHHH ALVLGVLGHAALAAGLVPRLGPLWVSARLERVMSEQRLLPRQGVAEAPVAVAGYAEPSLV HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEE FALGTPTELHGADEAAQAIAENRPAIVEAREAEAFRQALAARGVTAREVARIRGLNYSKG EEECCCHHHCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC DEVTLGVYVSPQTVVREVRP CCEEEEEEECHHHHHHHCCC >Mature Secondary Structure TLERLIADWSRGWRGPAAAAFIAFVAGLPGLLAVPPLDRDESRFAQATAQMLESGDFVV CHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHCCCCEEE IRFQEDPRFKKPVGIHWMQAASVELVSSPEAREIWAYRLPSLLGAMLAAAACAWGAAAFF EEECCCCCCCCCCCCEEHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGPAGLAAGALLGATFLLSTEAFIAKTDAMLAGTVTLALAALGRLYAAARDGPPAGKSAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PLFWAGLALSALVKGPVGPLVVALTLIVLALWDRRPAWIARLRWYWGLIAFAVIVGPWAG CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC AVTVATDGGFWTEAIGADLAPKLAGGQETHGAPPGYHALLTPILAFPITLLLPAAIFVAW EEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH TRRAEPGVRFAIAWLVPAWLLFELTPTKLPHYPLPAYGALAWLAAAALAQPIGPRLRWAG HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH AALGVVVGLALAVGVIYLLSLYGGAADAWAAALAAVLLSGAGLVGGYLMIKGAPRGGVAA HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCEEEEECCCCCHHHH ALVLGVLGHAALAAGLVPRLGPLWVSARLERVMSEQRLLPRQGVAEAPVAVAGYAEPSLV HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEE FALGTPTELHGADEAAQAIAENRPAIVEAREAEAFRQALAARGVTAREVARIRGLNYSKG EEECCCHHHCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC DEVTLGVYVSPQTVVREVRP CCEEEEEEECHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA