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The map label for this gene is cycM [H]

Identifier: 197103826

GI number: 197103826

Start: 365176

End: 365850

Strand: Reverse

Name: cycM [H]

Synonym: PHZ_c0360

Alternate gene names: 197103826

Gene position: 365850-365176 (Counterclockwise)

Preceding gene: 197103829

Following gene: 197103818

Centisome position: 9.15

GC content: 72.59

Gene sequence:

>675_bases
ATGAGCGACCTTACGTTCAACAAGGTCGCCGGCGCGGTGCTGGCGACGGGCCTGGCCATTGTTGGCCTTCGCGAACTCTC
CAACGGCGTGTTCGCGCCGCATCCGCCGGAGAAGATGGGCTACCTCATCGAGGTCGCCGAGGAGACCGGCGGCGCCGCGG
CGGCCGAGGCTCCGATCGACTGGGGCACGGTGCTGCCGACCGCCGACCTCGCCGCGGGCGAGGCCGCCTTCGCCAAGTGC
CAATCCTGCCACAACGTCGCCCAGGGCGGCGCCAACGGCACCGGCCCGAACCTGTGGGGCGTCGTCGGCGCCAAGCCGGG
CGCCCACCCGGGCTTCGCCTATTCGCCGGCCATGACCGAGTTCGGCGCCCAGAACCCCGTCTGGGACTATGAGCACCTCA
GCGAGTTCCTGGCGGCCCCGCAGAAGTACATCGCCGGCACGAAGATGACCTTCGTCGGCCTGAAGAAGCGCGAAGACCGG
ATCAACATGATCGCCTTCCTGCGCTCCAAGGGCGGCACGCTGCCGATCCCGGCCCCGAACCCGGTCGCCGCCGAGCCGGA
AGCCGCGCCCGCCGAGGAAGGCGCGGCCCCGGCCGAGGGCGCGGCGCCCGCCGATGCCCCGGCCGAGGGCGAAGCCGCCC
CCGCCGCTCCCGAAGCGGCGCCCGCCAAGAAGTAG

Upstream 100 bases:

>100_bases
CGCCGGTACCGTGTAAGAGAGCCGCACGCAACAAGGGGCGGGTTTCCCGCGTCGTTCGCCGACGGCGGCGTCGGCCGGAG
AGAGGCGTGATCTAGGGACT

Downstream 100 bases:

>100_bases
TCCGGACCTCTTAGAGGATCCGCCTGAAGGCCGTGGGCTCGCCGTAGCCCGCGGCCTTTATGCGTTCCACGGCGGCCTCC
AGCGGCTCCACCACCGTCAT

Product: cytochrome c, membrane-bound

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSDLTFNKVAGAVLATGLAIVGLRELSNGVFAPHPPEKMGYLIEVAEETGGAAAAEAPIDWGTVLPTADLAAGEAAFAKC
QSCHNVAQGGANGTGPNLWGVVGAKPGAHPGFAYSPAMTEFGAQNPVWDYEHLSEFLAAPQKYIAGTKMTFVGLKKREDR
INMIAFLRSKGGTLPIPAPNPVAAEPEAAPAEEGAAPAEGAAPADAPAEGEAAPAAPEAAPAKK

Sequences:

>Translated_224_residues
MSDLTFNKVAGAVLATGLAIVGLRELSNGVFAPHPPEKMGYLIEVAEETGGAAAAEAPIDWGTVLPTADLAAGEAAFAKC
QSCHNVAQGGANGTGPNLWGVVGAKPGAHPGFAYSPAMTEFGAQNPVWDYEHLSEFLAAPQKYIAGTKMTFVGLKKREDR
INMIAFLRSKGGTLPIPAPNPVAAEPEAAPAEEGAAPAEGAAPADAPAEGEAAPAAPEAAPAKK
>Mature_223_residues
SDLTFNKVAGAVLATGLAIVGLRELSNGVFAPHPPEKMGYLIEVAEETGGAAAAEAPIDWGTVLPTADLAAGEAAFAKCQ
SCHNVAQGGANGTGPNLWGVVGAKPGAHPGFAYSPAMTEFGAQNPVWDYEHLSEFLAAPQKYIAGTKMTFVGLKKREDRI
NMIAFLRSKGGTLPIPAPNPVAAEPEAAPAEEGAAPAEGAAPADAPAEGEAAPAAPEAAPAKK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=102, Percent_Identity=45.0980392156863, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17566554, Length=107, Percent_Identity=42.0560747663551, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=104, Percent_Identity=41.3461538461538, Blast_Score=81, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6320796, Length=90, Percent_Identity=43.3333333333333, Blast_Score=92, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6322508, Length=92, Percent_Identity=42.3913043478261, Blast_Score=89, Evalue=7e-19,
Organism=Drosophila melanogaster, GI17137228, Length=106, Percent_Identity=43.3962264150943, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI17137204, Length=106, Percent_Identity=44.3396226415094, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22664; Mature: 22532

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLTFNKVAGAVLATGLAIVGLRELSNGVFAPHPPEKMGYLIEVAEETGGAAAAEAPID
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEHHHCCCCCCCCCCCC
WGTVLPTADLAAGEAAFAKCQSCHNVAQGGANGTGPNLWGVVGAKPGAHPGFAYSPAMTE
CCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
FGAQNPVWDYEHLSEFLAAPQKYIAGTKMTFVGLKKREDRINMIAFLRSKGGTLPIPAPN
HCCCCCCCCHHHHHHHHHCHHHHHCCCCEEEEECHHCHHHHHHHHHHHCCCCEECCCCCC
PVAAEPEAAPAEEGAAPAEGAAPADAPAEGEAAPAAPEAAPAKK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDLTFNKVAGAVLATGLAIVGLRELSNGVFAPHPPEKMGYLIEVAEETGGAAAAEAPID
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEHHHCCCCCCCCCCCC
WGTVLPTADLAAGEAAFAKCQSCHNVAQGGANGTGPNLWGVVGAKPGAHPGFAYSPAMTE
CCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
FGAQNPVWDYEHLSEFLAAPQKYIAGTKMTFVGLKKREDRINMIAFLRSKGGTLPIPAPN
HCCCCCCCCHHHHHHHHHCHHHHHCCCCEEEEECHHCHHHHHHHHHHHCCCCEECCCCCC
PVAAEPEAAPAEEGAAPAEGAAPADAPAEGEAAPAAPEAAPAKK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]