Definition Phenylobacterium zucineum HLK1, complete genome.
Accession NC_011144
Length 3,996,255

Click here to switch to the map view.

The map label for this gene is 197103754

Identifier: 197103754

GI number: 197103754

Start: 280354

End: 281682

Strand: Direct

Name: 197103754

Synonym: PHZ_c0288

Alternate gene names: NA

Gene position: 280354-281682 (Clockwise)

Preceding gene: 197103753

Following gene: 197103762

Centisome position: 7.02

GC content: 72.99

Gene sequence:

>1329_bases
TTGCGGATGACGAAGCTCTTCTGCTCGGCCGCCGCCCTGGCGCTGCTCGCCGTCGCCGCCCCCGCTCAGGCCCAGTCGCC
TCAGACCCCGCAGATCGATCCGAAGATCGCCGCCCGCGTGGACCGGGTGCTGGCCCGAACGCCGCTGATCGACGGCCACA
ACGACCTGCCCTGGGCGGTCCGCGAGCGGTTCGAGAGCAAGCTGGACCGCGCGGACCTGTCGAAGGACACCGCCGCCCTG
CCGAAGCCGGCGGACGAGCCGCCGCTGATGACCGACATCCCGCGCCTGAAGGCCGGCCGGGTCGGCGGCCAGTTCTGGTC
GGTGTGGATCCCGGCCACCCTCGACGGGCCCGAGGCGGTGCAGACGACCCTCGAGCAGATCGACATCGTCAAGCAGATGG
CCGCCCGCTGGCCGGCCGACCTGGAGATGGCCTACACGGCGGCCGACATCGTGCGCATCCACAAGGCGGGCAAGGTCGCC
TCGCTGGTGGGAATCGAGGGCGGCCACCAGATCAACGACAGCCTGCCGGCGCTGCGCCAGATGTACGACGCCGGCGCGCG
CTATATGACCCTGACCCACTCGCGGGCGACCCGCTGGGCCGACTCGGCCACCGACAATCCGCGCCACGACGGCCTGTCGC
CCTTCGGCGAGGAGGTGGTCCGCGAGATGAACCGCATGGGCATGCTGGTGGACCTGAGCCACGTCTCGGAGGCCGGCATG
AAGGACGCCCTGCGCGTCTCGGCCGCGCCGGTGATCTTCTCGCACTCGGGCGCCCGCGCCGTGGCCGACCATCCGCGCAA
CGTCTCGGACGAGGTGCTGGCCCTGCTGAAGGCCAACCGCGGCGTGGTGATGGTCAACTTCGCCACCCTCTATGCCTCGG
ACGAGATGGTGAAGTGGAGCGCCGACCGGGCGGCCGAGCGGGCCCGCTACAACGCCCCGCCGTTCGCCGGCCTCTACATC
GGCCAGCCCGAGCGCGCCGCCGCGGCCCTGGCGGCCTGGGAGGCGGCCCATCCGCGACCGGTGGTGACCGTGGGCATGAT
CGCCGACCACGTGGAGCATATCGTGCGGGTCTGCGGCGCGGACTGCGTGGGGATCGGCTCGGACTTCGACGGCATCCCGG
ACACGCCCGCGGGGCTGGAGGGCGTGGACCGGTTTCCCGTGCTGCTGGCCGAGCTCGCCCGCCGCGGCTGGAGCGACGCC
GACCTCGGCAAGCTGGCCGGCGGCAACGTCCTGCGGGTCATGCGCGAGGCCGAGGCGGTCGCGCGGCGCCTGCAGGCCGA
GCGGCCGCCCTCCAGCGCCACCCTCGCCGAGCTGGACGGGAAGCGGTGA

Upstream 100 bases:

>100_bases
ACCGAGCAGGCCGCCCTGGACGCGGCCGGGATCGAGACCGAGATCCTGCCGATCGCCCGCTGAGCACGCCGTTGACCGCC
ACGGCCATGCTTGCGAAGCC

Downstream 100 bases:

>100_bases
TCCTTCCCCCGCAAGGGGGAGAAGGGGGCTAGGCGTCCAGCGGCCGGCCCCTGGTCTCCTTCAGGAACAGGAAGCAGATC
ACGACCGACAGCGCCGTGAA

Product: dipeptidase

Products: NA

Alternate protein names: ORF X [H]

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAVRERFESKLDRADLSKDTAAL
PKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAVQTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVA
SLVGIEGGHQINDSLPALRQMYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM
KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWSADRAAERARYNAPPFAGLYI
GQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGADCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDA
DLGKLAGGNVLRVMREAEAVARRLQAERPPSSATLAELDGKR

Sequences:

>Translated_442_residues
MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAVRERFESKLDRADLSKDTAAL
PKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAVQTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVA
SLVGIEGGHQINDSLPALRQMYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM
KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWSADRAAERARYNAPPFAGLYI
GQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGADCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDA
DLGKLAGGNVLRVMREAEAVARRLQAERPPSSATLAELDGKR
>Mature_442_residues
MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAVRERFESKLDRADLSKDTAAL
PKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAVQTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVA
SLVGIEGGHQINDSLPALRQMYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM
KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWSADRAAERARYNAPPFAGLYI
GQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGADCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDA
DLGKLAGGNVLRVMREAEAVARRLQAERPPSSATLAELDGKR

Specific function: Unknown

COG id: COG2355

COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M19 family [H]

Homologues:

Organism=Homo sapiens, GI189458885, Length=393, Percent_Identity=40.9669211195929, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI4758190, Length=393, Percent_Identity=40.9669211195929, Blast_Score=289, Evalue=3e-78,
Organism=Homo sapiens, GI11641269, Length=387, Percent_Identity=38.2428940568475, Blast_Score=263, Evalue=2e-70,
Organism=Homo sapiens, GI193211608, Length=399, Percent_Identity=35.5889724310777, Blast_Score=252, Evalue=4e-67,
Organism=Homo sapiens, GI193211610, Length=399, Percent_Identity=35.5889724310777, Blast_Score=248, Evalue=8e-66,
Organism=Drosophila melanogaster, GI221475880, Length=384, Percent_Identity=41.40625, Blast_Score=299, Evalue=3e-81,
Organism=Drosophila melanogaster, GI281362638, Length=396, Percent_Identity=40.4040404040404, Blast_Score=280, Evalue=2e-75,
Organism=Drosophila melanogaster, GI281362636, Length=396, Percent_Identity=40.4040404040404, Blast_Score=280, Evalue=2e-75,
Organism=Drosophila melanogaster, GI161083233, Length=375, Percent_Identity=38.4, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI21356391, Length=345, Percent_Identity=28.695652173913, Blast_Score=139, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008257 [H]

Pfam domain/function: PF01244 Peptidase_M19 [H]

EC number: NA

Molecular weight: Translated: 47689; Mature: 47689

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
RERFESKLDRADLSKDTAALPKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAV
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCHHHH
QTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVASLVGIEGGHQINDSLPALRQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHEEECCCCCCCCHHHHHHHH
MYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM
HHHCCCCEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH
KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWS
HHHHHHHCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEECC
ADRAAERARYNAPPFAGLYIGQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGA
HHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC
DCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDADLGKLAGGNVLRVMREAEAV
CCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHH
ARRLQAERPPSSATLAELDGKR
HHHHHCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAV
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
RERFESKLDRADLSKDTAALPKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAV
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCHHHH
QTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVASLVGIEGGHQINDSLPALRQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHEEECCCCCCCCHHHHHHHH
MYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM
HHHCCCCEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH
KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWS
HHHHHHHCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEECC
ADRAAERARYNAPPFAGLYIGQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGA
HHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC
DCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDADLGKLAGGNVLRVMREAEAV
CCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHH
ARRLQAERPPSSATLAELDGKR
HHHHHCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1313537 [H]