| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is regB [H]
Identifier: 197103693
GI number: 197103693
Start: 228342
End: 229712
Strand: Reverse
Name: regB [H]
Synonym: PHZ_c0227
Alternate gene names: 197103693
Gene position: 229712-228342 (Counterclockwise)
Preceding gene: 197103697
Following gene: 197103692
Centisome position: 5.75
GC content: 73.81
Gene sequence:
>1371_bases ATGGCGAACGCGCGCGCGCAGACGGCGGCGATCCCGGCCCCCCATCGCCTCGATAGGGCGGCGGCGAACGGGGTGCAAGG CGTCTGGGACGCCGACGCGGTGAACCGCAGCCACCTGCGGCTGCGCACCCTGGTGACCCTGCGCTGGCTGGTGATCGCCG GCCAGACGGCGCTGCTCCTCGCCCTGGGCCTGCTGCTGGACTATCCGGGCCCCTATGCGCTCGCCGCGCTGGCGATCGGC GTCGGCGGCTTCGTCAACCTGCTCACCGGCGTGGCCTCGCCCCTGCAGCGGGTGCTGGGCGACCGTGAGGCCACGGCGCA CCTGGCCTTCGACATCCTCCAGATCGCGATCTTCATGGGCCTGATGGGCGGCACGGCGAACCCGTTCGTCGTCCTCCTGA TCGTGCCGGTGACCCTGGCGGCCGCGACCCTGCCCCTGCGCCACACGCTGCTGCTCGCGGGGCTGGCCGCCCTCGCCTCC CTGGCGCTGGCCGGCGTGTCCCTGCCGGCCCCGGCGGCCGCGCCCGGCCCGCGCATGTCGCTCGAGTACCGGCTGGCCGC GGGCCTGGCCAACATCGCCGGCATCGCGCTGATCGCCAGCTACGTGCGCCAGTCGGCCGCCGAGGCCGCGCGGATGGCCC TGGCCCTCGACGTCACCCAGGCGGTGCTGGCCAAGGAGCAGCGGCTCTCGGCCCTCGGGACCCTGGCGGCGGCCGCGGCG CACGAGCTCGGCACCCCGCTCGCCACCATCTCCATCGTCGCCAAGGAGATGGCCCGCGAGGCGCCGACGCCGCAGGTGAA GGAGGACGCCGACCTGCTGATGGCCCAGGCCGAGCGCTGCCGGGAGATCCTGCGGCGGCTCACCGCCACCCCCGACGCCC ATTCCGACGAGGTCCACGAGCGCCTCTCCCTGCGCCAGCTCGTGCAGGAGGTGATCGAGCCCCACGCCGCGGTGAAGGAC GTGCGGGTCGAGGCCATCGTCACCGGCGCCAAGGGCGTGAAGGCGCCCGACATCCGCCGCCTGCCCGAGATCACCCACGC CATGACCTCGTTCGTGGAGAACGCCGTGGACTTCGCCGCCTCCGAGGTCCTCGTCACGGCCCGCTTCGACGCCGACACCG TCTCGATGGAGGTGCGCGACGACGGCCCCGGATTCGCGCCCGAGATCATCGCCAAGCTGGGCGAGCCCTATGTGACCAGC CGTCCGGGGGTGGAGGGCGGCCGCACCGGCCACGTCGGCATGGGCCTGGGCTTCTTCATCGCGAAAACGTTGCTGGAACG AACCGGCGCCCGGGTGTCGTTTCAGAACGGACGGCCGCGCGGCGCGGTCGTCACCGCGCGCTGGGCGCGATCGACCATCG AGGCCGGCTGA
Upstream 100 bases:
>100_bases GCGCCAGAGCCAAGACCGCGACGAGCGCGAGGACGCGCCTGGACATGCGAGCTTCCCTTGTCTTGCGGCCCGGCCGCGGC GGGCGGGCCTGAGGAGGACC
Downstream 100 bases:
>100_bases ACGGCGGCAGCCAAGCTTGCCCTGATGCGTTGAGGTGCGACAGACTGCCGCAGAGCACAGTGAGGGAGCCCGCCGGGATT TGAGTATGACCGATCTCTCC
Product: sensor histidine kinase
Products: NA
Alternate protein names: Protein prrB [H]
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MANARAQTAAIPAPHRLDRAAANGVQGVWDADAVNRSHLRLRTLVTLRWLVIAGQTALLLALGLLLDYPGPYALAALAIG VGGFVNLLTGVASPLQRVLGDREATAHLAFDILQIAIFMGLMGGTANPFVVLLIVPVTLAAATLPLRHTLLLAGLAALAS LALAGVSLPAPAAAPGPRMSLEYRLAAGLANIAGIALIASYVRQSAAEAARMALALDVTQAVLAKEQRLSALGTLAAAAA HELGTPLATISIVAKEMAREAPTPQVKEDADLLMAQAERCREILRRLTATPDAHSDEVHERLSLRQLVQEVIEPHAAVKD VRVEAIVTGAKGVKAPDIRRLPEITHAMTSFVENAVDFAASEVLVTARFDADTVSMEVRDDGPGFAPEIIAKLGEPYVTS RPGVEGGRTGHVGMGLGFFIAKTLLERTGARVSFQNGRPRGAVVTARWARSTIEAG
Sequences:
>Translated_456_residues MANARAQTAAIPAPHRLDRAAANGVQGVWDADAVNRSHLRLRTLVTLRWLVIAGQTALLLALGLLLDYPGPYALAALAIG VGGFVNLLTGVASPLQRVLGDREATAHLAFDILQIAIFMGLMGGTANPFVVLLIVPVTLAAATLPLRHTLLLAGLAALAS LALAGVSLPAPAAAPGPRMSLEYRLAAGLANIAGIALIASYVRQSAAEAARMALALDVTQAVLAKEQRLSALGTLAAAAA HELGTPLATISIVAKEMAREAPTPQVKEDADLLMAQAERCREILRRLTATPDAHSDEVHERLSLRQLVQEVIEPHAAVKD VRVEAIVTGAKGVKAPDIRRLPEITHAMTSFVENAVDFAASEVLVTARFDADTVSMEVRDDGPGFAPEIIAKLGEPYVTS RPGVEGGRTGHVGMGLGFFIAKTLLERTGARVSFQNGRPRGAVVTARWARSTIEAG >Mature_455_residues ANARAQTAAIPAPHRLDRAAANGVQGVWDADAVNRSHLRLRTLVTLRWLVIAGQTALLLALGLLLDYPGPYALAALAIGV GGFVNLLTGVASPLQRVLGDREATAHLAFDILQIAIFMGLMGGTANPFVVLLIVPVTLAAATLPLRHTLLLAGLAALASL ALAGVSLPAPAAAPGPRMSLEYRLAAGLANIAGIALIASYVRQSAAEAARMALALDVTQAVLAKEQRLSALGTLAAAAAH ELGTPLATISIVAKEMAREAPTPQVKEDADLLMAQAERCREILRRLTATPDAHSDEVHERLSLRQLVQEVIEPHAAVKDV RVEAIVTGAKGVKAPDIRRLPEITHAMTSFVENAVDFAASEVLVTARFDADTVSMEVRDDGPGFAPEIIAKLGEPYVTSR PGVEGGRTGHVGMGLGFFIAKTLLERTGARVSFQNGRPRGAVVTARWARSTIEAG
Specific function: Member of the two-component regulatory system RegB/RegA. Involved in the positive regulation of photosynthesis gene expression in response to anaerobiosis. Also involved in positive regulation of the cbbI and cbbII Calvin cycle CO2 fixation operons, as we
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 47809; Mature: 47678
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANARAQTAAIPAPHRLDRAAANGVQGVWDADAVNRSHLRLRTLVTLRWLVIAGQTALLL CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCHHHHH ALGLLLDYPGPYALAALAIGVGGFVNLLTGVASPLQRVLGDREATAHLAFDILQIAIFMG HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LMGGTANPFVVLLIVPVTLAAATLPLRHTLLLAGLAALASLALAGVSLPAPAAAPGPRMS HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE LEYRLAAGLANIAGIALIASYVRQSAAEAARMALALDVTQAVLAKEQRLSALGTLAAAAA EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HELGTPLATISIVAKEMAREAPTPQVKEDADLLMAQAERCREILRRLTATPDAHSDEVHE HHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RLSLRQLVQEVIEPHAAVKDVRVEAIVTGAKGVKAPDIRRLPEITHAMTSFVENAVDFAA HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SEVLVTARFDADTVSMEVRDDGPGFAPEIIAKLGEPYVTSRPGVEGGRTGHVGMGLGFFI HHEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH AKTLLERTGARVSFQNGRPRGAVVTARWARSTIEAG HHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHCCC >Mature Secondary Structure ANARAQTAAIPAPHRLDRAAANGVQGVWDADAVNRSHLRLRTLVTLRWLVIAGQTALLL CCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCHHHHH ALGLLLDYPGPYALAALAIGVGGFVNLLTGVASPLQRVLGDREATAHLAFDILQIAIFMG HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LMGGTANPFVVLLIVPVTLAAATLPLRHTLLLAGLAALASLALAGVSLPAPAAAPGPRMS HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE LEYRLAAGLANIAGIALIASYVRQSAAEAARMALALDVTQAVLAKEQRLSALGTLAAAAA EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HELGTPLATISIVAKEMAREAPTPQVKEDADLLMAQAERCREILRRLTATPDAHSDEVHE HHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RLSLRQLVQEVIEPHAAVKDVRVEAIVTGAKGVKAPDIRRLPEITHAMTSFVENAVDFAA HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SEVLVTARFDADTVSMEVRDDGPGFAPEIIAKLGEPYVTSRPGVEGGRTGHVGMGLGFFI HHEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH AKTLLERTGARVSFQNGRPRGAVVTARWARSTIEAG HHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751278; 10358089 [H]