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The map label for this gene is ybhD [H]

Identifier: 197103675

GI number: 197103675

Start: 207210

End: 208094

Strand: Reverse

Name: ybhD [H]

Synonym: PHZ_c0209

Alternate gene names: 197103675

Gene position: 208094-207210 (Counterclockwise)

Preceding gene: 197103682

Following gene: 197103671

Centisome position: 5.21

GC content: 72.66

Gene sequence:

>885_bases
ATGCGGTTCGATTTCACCGACCTGAGGCTGTTCTGCGAGGTGGTTGACGCAGGGTCCATCACCGCCGGCGCCGAGCGGAG
CGCGCTGGCGCTGGCCGCCGCCTCGACCCGGATCCGCAACATGGAGGCCGCGCTCGGCGCGCCCCTGCTCTCGCGCTCGC
GCCAGGGCGTCAGCCCCACCCCCGCCGGGCGGATGCTGCTGAAGCACGCCCGCGCCATGCTGGCCCAGCAGGCGCGGATG
CGCGAGGATCTGTCCGCCTACGCCGGCGGCCTCTCGGGCGAGGTGAAGGTGCTGGCCAACACCAACGCGCTCACCGAATT
CCTGCCCGAGACCCTGTCGGGGTTCCTGGCCGACCATCCGCACGTCAGCGTCGACCTGGAGGAGCGCCTGTCGGACGAGA
TCGTCGGCCTGATCGCCGAGGGCGTCGGCGACATCGGCATCGTCGCCGGCACGGTCGAGGTCGGCCGGCTGCAGACCTAT
CCCTTCCGCTCGGACCGGTTCGTGGTGGTGACGGCGAAGGATCACCCGCTCGCGGCGCGCAAGAGCGTGGGCTTCGCCGA
GGTGCTGGACTTCGACTTCGTGGGCCTTGAGCGGTCCAGCTCGCTGCAGCGGTTCCTCACCGCCAAGGCCGTCCGCGAGG
GCCGCCCGCTCAAGCTGCGGGTGCAGCTGCGCAGCTTCGACGCCGTCTGCCGGCTGGTGGAGTGCGGCGTGGGCGTCGGC
GTGGTGCCCGAGACCACCGCCGCGCGGGCCGCGCGGACCATGTCGCTGGGCGTCGTGGCCCTGGCCGACGACTGGGCCCT
GCGCGAACTGCGCATCGTCGTCCGGGCCGAAGACGAGCTGCGCCCCTACGCGCGCGAGCTGGTGGCGGCCCTGAAGAGCG
CCTGA

Upstream 100 bases:

>100_bases
CGGGCGCAGCCTCGCATCCTTCGCGACCGCCGAAGTTTTCCCATGGCGGGCTTCTGCACAATCCGTCTTTCCTGTAGCTT
TCCTTCGCGAGGTGCGAAGG

Downstream 100 bases:

>100_bases
CGAACGCCCGAGGCGCGGAGGTTCAGGCCTGCGCCGGCGCGCCGCCCGACAGTCGCGCGATCAGGCCCGCCCCGGCGTCG
CGCAGGGCGAAGACGGCGCG

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRFDFTDLRLFCEVVDAGSITAGAERSALALAAASTRIRNMEAALGAPLLSRSRQGVSPTPAGRMLLKHARAMLAQQARM
REDLSAYAGGLSGEVKVLANTNALTEFLPETLSGFLADHPHVSVDLEERLSDEIVGLIAEGVGDIGIVAGTVEVGRLQTY
PFRSDRFVVVTAKDHPLAARKSVGFAEVLDFDFVGLERSSSLQRFLTAKAVREGRPLKLRVQLRSFDAVCRLVECGVGVG
VVPETTAARAARTMSLGVVALADDWALRELRIVVRAEDELRPYARELVAALKSA

Sequences:

>Translated_294_residues
MRFDFTDLRLFCEVVDAGSITAGAERSALALAAASTRIRNMEAALGAPLLSRSRQGVSPTPAGRMLLKHARAMLAQQARM
REDLSAYAGGLSGEVKVLANTNALTEFLPETLSGFLADHPHVSVDLEERLSDEIVGLIAEGVGDIGIVAGTVEVGRLQTY
PFRSDRFVVVTAKDHPLAARKSVGFAEVLDFDFVGLERSSSLQRFLTAKAVREGRPLKLRVQLRSFDAVCRLVECGVGVG
VVPETTAARAARTMSLGVVALADDWALRELRIVVRAEDELRPYARELVAALKSA
>Mature_294_residues
MRFDFTDLRLFCEVVDAGSITAGAERSALALAAASTRIRNMEAALGAPLLSRSRQGVSPTPAGRMLLKHARAMLAQQARM
REDLSAYAGGLSGEVKVLANTNALTEFLPETLSGFLADHPHVSVDLEERLSDEIVGLIAEGVGDIGIVAGTVEVGRLQTY
PFRSDRFVVVTAKDHPLAARKSVGFAEVLDFDFVGLERSSSLQRFLTAKAVREGRPLKLRVQLRSFDAVCRLVECGVGVG
VVPETTAARAARTMSLGVVALADDWALRELRIVVRAEDELRPYARELVAALKSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=296, Percent_Identity=25.6756756756757, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=23.0088495575221, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787879, Length=314, Percent_Identity=24.5222929936306, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=246, Percent_Identity=23.1707317073171, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787530, Length=239, Percent_Identity=24.2677824267782, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=252, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=23.4567901234568, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=281, Percent_Identity=22.0640569395018, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=253, Percent_Identity=28.4584980237154, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=243, Percent_Identity=23.8683127572016, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789204, Length=244, Percent_Identity=23.3606557377049, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31686; Mature: 31686

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDFTDLRLFCEVVDAGSITAGAERSALALAAASTRIRNMEAALGAPLLSRSRQGVSPT
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
PAGRMLLKHARAMLAQQARMREDLSAYAGGLSGEVKVLANTNALTEFLPETLSGFLADHP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
HVSVDLEERLSDEIVGLIAEGVGDIGIVAGTVEVGRLQTYPFRSDRFVVVTAKDHPLAAR
CEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEECCCCCCCEEEEEECCCCCHHH
KSVGFAEVLDFDFVGLERSSSLQRFLTAKAVREGRPLKLRVQLRSFDAVCRLVECGVGVG
HCCCHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCC
VVPETTAARAARTMSLGVVALADDWALRELRIVVRAEDELRPYARELVAALKSA
CCCCHHHHHHHHHHHCEEEEEECCHHHHHEEEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRFDFTDLRLFCEVVDAGSITAGAERSALALAAASTRIRNMEAALGAPLLSRSRQGVSPT
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
PAGRMLLKHARAMLAQQARMREDLSAYAGGLSGEVKVLANTNALTEFLPETLSGFLADHP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
HVSVDLEERLSDEIVGLIAEGVGDIGIVAGTVEVGRLQTYPFRSDRFVVVTAKDHPLAAR
CEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEECCCCCCCEEEEEECCCCCHHH
KSVGFAEVLDFDFVGLERSSSLQRFLTAKAVREGRPLKLRVQLRSFDAVCRLVECGVGVG
HCCCHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCC
VVPETTAARAARTMSLGVVALADDWALRELRIVVRAEDELRPYARELVAALKSA
CCCCHHHHHHHHHHHCEEEEEECCHHHHHEEEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]