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The map label for this gene is ihfB [H]

Identifier: 197103657

GI number: 197103657

Start: 185737

End: 186099

Strand: Direct

Name: ihfB [H]

Synonym: PHZ_c0191

Alternate gene names: 197103657

Gene position: 185737-186099 (Clockwise)

Preceding gene: 197103656

Following gene: 197103658

Centisome position: 4.65

GC content: 68.04

Gene sequence:

>363_bases
GTGCGTAAACCCTTTTTACGCCTTGAACGGATTGGGAGAGTCGCCCATGGTCGCGCCGGTTCGAGGGGCCTCATGATCAA
GTCAGAGCTGATCGCGAAACTCGCCGAAGAGAACCCGCACCTGACCCAGCGCGACATCGAGCGGGTGGTCGGCGTGATCC
TGGAGCGGATGATCGAGGCCCTCGAAGAGGGCGGCCGCGTCGAGCTGCGCGGCTTCGGCGCCCTGTCGGTCCGCTCGCGC
GATGCGCGGGCCGGCCGCAACCCGCGCACCGGCGAGCCGGTGGACGTGCGGGCCAAGCACGTGCCCTTCTTCAAGAGCGG
CAAGGAGCTGCGCGAGCGGCTGAACGCCGTGGACGAGCGCTAA

Upstream 100 bases:

>100_bases
CGGACCGCCCCGCCCGGGGCGGTTCGAAGCGAAGGCCCCGTCCGGTCCGCCGGGCGGGGCTTTTTCGTGCCCGCAACCCG
CGCAAGGCTTAACCGACGAC

Downstream 100 bases:

>100_bases
GCCGCCCCGGAGGGCTGGTCGATGAGCATCATCTCGGAATTCCGCGAATTCATCGCCCGCGGCAACGTGATCGACCTGGC
GGTCGGCGTGATCATCGGCG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MRKPFLRLERIGRVAHGRAGSRGLMIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSR
DARAGRNPRTGEPVDVRAKHVPFFKSGKELRERLNAVDER

Sequences:

>Translated_120_residues
MRKPFLRLERIGRVAHGRAGSRGLMIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSR
DARAGRNPRTGEPVDVRAKHVPFFKSGKELRERLNAVDER
>Mature_120_residues
MRKPFLRLERIGRVAHGRAGSRGLMIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSR
DARAGRNPRTGEPVDVRAKHVPFFKSGKELRERLNAVDER

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=48.3516483516484, Blast_Score=94, Evalue=3e-21,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=39.5604395604396, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=37.7777777777778, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI1788005, Length=74, Percent_Identity=39.1891891891892, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13590; Mature: 13590

Theoretical pI: Translated: 11.53; Mature: 11.53

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPFLRLERIGRVAHGRAGSRGLMIKSELIAKLAEENPHLTQRDIERVVGVILERMIEA
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LEEGGRVELRGFGALSVRSRDARAGRNPRTGEPVDVRAKHVPFFKSGKELRERLNAVDER
HHCCCCEEEEECCEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRKPFLRLERIGRVAHGRAGSRGLMIKSELIAKLAEENPHLTQRDIERVVGVILERMIEA
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LEEGGRVELRGFGALSVRSRDARAGRNPRTGEPVDVRAKHVPFFKSGKELRERLNAVDER
HHCCCCEEEEECCEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA