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The map label for this gene is ccmB [H]

Identifier: 197103605

GI number: 197103605

Start: 129410

End: 130075

Strand: Reverse

Name: ccmB [H]

Synonym: PHZ_c0139

Alternate gene names: 197103605

Gene position: 130075-129410 (Counterclockwise)

Preceding gene: 197103606

Following gene: 197103603

Centisome position: 3.25

GC content: 77.78

Gene sequence:

>666_bases
ATGAGCCGCTTCTCCGCCCTGCTCGCCCGCGAGACGGCCCTGGCCTGGGGCCGCGGCGGCGGCCCGCTGGTGGCAGTGGG
CTTCTACGCCGGCGTCGCCACCCTGATCCCGCTGGCGATCGGGCCCGAGCCCGACCGGCTGGCGGCCATCGCGCCCGGGG
CGGCCTGGGTGGCCCTGGCGCTCGCCTCGCTGCTGTCCCTCGATCGGCTTTTCGAGCGCGACTTCGAGGACGGGGCCCTG
GACCTGCTGGCGCTCTCGCCGCTGCCGCTGGAGCTCACCTGCGCCGTGAAGTGCCTCGGCCAGTGGCTGGCCACCGGCGC
GCCCCTGGCGGCGGCCGCGCCTGTCGCCGCGATCGCGCTCGGCGCCTCGCCGGCGCTCGCCCCCATGATCTTCGCCTGCG
CGCTGCTGGGCGGCGTCGCCTTCGCCTTCATGGGCGGCATCGGCGCGGCGCTCAGCCTCGGCGCCCGCCGCGGGGGCCTG
CTGACGGCGGTGATCGTCCTGCCGCTGTTCGTCCCGCCGGTGATCTTCGGCGGCGGCGCCCTGGACGCCTTCGCCTCGGG
CCTGCCGTGGAAGGCCGGGTTCGCCCTGCTGGGCGCCTACGCCGCCGCCGCCCTGGCGCTGGGGCCGCTGGCCATGGCCG
CCGCCTGCCGCAACGCGCTGTCCTAG

Upstream 100 bases:

>100_bases
CGGGCGAGCTGATGGCCGGACACCTGGCCGACGGCGGGATGATCGTGGCCGCGGTGCACGACCCGCTGCCCATCCCCGCG
GTCGCGCTGGATCTCGGCGC

Downstream 100 bases:

>100_bases
GCCTTCTCGCCTAGTCCCTGGCGGCCGGCCGCGGCTTGGGATGCCACATGGCGTTGACGATCACCCACCGCTCGCCGAAC
CGGCCGAGGTGGAAGTAGTC

Product: heme exporter protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycW [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSRFSALLARETALAWGRGGGPLVAVGFYAGVATLIPLAIGPEPDRLAAIAPGAAWVALALASLLSLDRLFERDFEDGAL
DLLALSPLPLELTCAVKCLGQWLATGAPLAAAAPVAAIALGASPALAPMIFACALLGGVAFAFMGGIGAALSLGARRGGL
LTAVIVLPLFVPPVIFGGGALDAFASGLPWKAGFALLGAYAAAALALGPLAMAAACRNALS

Sequences:

>Translated_221_residues
MSRFSALLARETALAWGRGGGPLVAVGFYAGVATLIPLAIGPEPDRLAAIAPGAAWVALALASLLSLDRLFERDFEDGAL
DLLALSPLPLELTCAVKCLGQWLATGAPLAAAAPVAAIALGASPALAPMIFACALLGGVAFAFMGGIGAALSLGARRGGL
LTAVIVLPLFVPPVIFGGGALDAFASGLPWKAGFALLGAYAAAALALGPLAMAAACRNALS
>Mature_220_residues
SRFSALLARETALAWGRGGGPLVAVGFYAGVATLIPLAIGPEPDRLAAIAPGAAWVALALASLLSLDRLFERDFEDGALD
LLALSPLPLELTCAVKCLGQWLATGAPLAAAAPVAAIALGASPALAPMIFACALLGGVAFAFMGGIGAALSLGARRGGLL
TAVIVLPLFVPPVIFGGGALDAFASGLPWKAGFALLGAYAAAALALGPLAMAAACRNALS

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=194, Percent_Identity=43.8144329896907, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 21814; Mature: 21683

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFSALLARETALAWGRGGGPLVAVGFYAGVATLIPLAIGPEPDRLAAIAPGAAWVALA
CCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH
LASLLSLDRLFERDFEDGALDLLALSPLPLELTCAVKCLGQWLATGAPLAAAAPVAAIAL
HHHHHHHHHHHHCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GASPALAPMIFACALLGGVAFAFMGGIGAALSLGARRGGLLTAVIVLPLFVPPVIFGGGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH
LDAFASGLPWKAGFALLGAYAAAALALGPLAMAAACRNALS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRFSALLARETALAWGRGGGPLVAVGFYAGVATLIPLAIGPEPDRLAAIAPGAAWVALA
CHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH
LASLLSLDRLFERDFEDGALDLLALSPLPLELTCAVKCLGQWLATGAPLAAAAPVAAIAL
HHHHHHHHHHHHCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GASPALAPMIFACALLGGVAFAFMGGIGAALSLGARRGGLLTAVIVLPLFVPPVIFGGGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH
LDAFASGLPWKAGFALLGAYAAAALALGPLAMAAACRNALS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1850420; 12597275 [H]