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The map label for this gene is ltrA [H]

Identifier: 197103574

GI number: 197103574

Start: 100180

End: 101073

Strand: Direct

Name: ltrA [H]

Synonym: PHZ_c0108

Alternate gene names: 197103574

Gene position: 100180-101073 (Clockwise)

Preceding gene: 197103566

Following gene: 197103575

Centisome position: 2.51

GC content: 73.49

Gene sequence:

>894_bases
ATGACGACCACGCCCGACTGGGACCTGCTGCAGAGCCTTCACGCCGTGCTGGAGGCGGGCAGCTTCTCGGCCGCGGCGCG
GCTGCGCCGGCTGACCCAGCCGACCCTCGGCCGTCACATCGACCAGCTGGAGCGCCAGCTGGGCGCGCCGCTGTTCCTGC
GCAGCCCCCGGGGCCTGCAGGCGACGGACCTCGCGCTCACCCTCAAGCCGCACCTCGCCGACATGGCCGCCGCCGCCGGC
GCGGCGGGGCGGGATGCGGCCGGGGCCGCCGATCACGCCGGCGGGGTCGTCCGCGTGGCCGCCAGCGAGATCATGGGCGC
CGAGGTGCTGCCGCCGATCCTGGCCAGGTTCCGCGAGGCCCACCCGCGGATCGACGTGGAGATCGCGGTCTCGAACCGCG
TCGAGGACCTTTCCCGCCGCGACGCCGACATCGCCGTGCGCATGGCGCGTCCGACCCAGAACGCGATCGTGGCGAAGAAG
GTGGGCGACATCGGGTTCGGCTTCTATGCGACCCCCCGCTACCTCGAGCGCCACGGGGTCCCGGACGACCTGGACGCGCT
CGGGGCCCACACCCTGATCGGCTATGACCGCAGCCCGCCGCCCAAGGGGATCGGCGTCGACATCGGGCGGCCGATCACCC
GCGACATCTTCGCCCTGCGGACCGACAACGACGTGGCCCAGCTCGCCCTGCTCAAGGCGGGGTTCGGGATCGGCGTCTGC
CAGCATCAGATCGGCCGCCGCGCGGGGCTGGTCCACGTGCTGCCGGGCGCCTTCCAGTTCCGGCTGGAGATCTGGATCTG
CATGCATGAGGCGCTGCGGGGGGCGCCGCGCATGCGGGCGATGTTCGATCACCTGGCGGCCGAGCTCGCCGGCTATGCTG
CGGAGGCGGGATGA

Upstream 100 bases:

>100_bases
CTGCGACGCCGCAGAATGCACGCGGTTGCAGCAATTTCTTGCCCGGCGACGATTGGGAAAGCGTTTCTGACGCCGGGAAG
CTTGAGCTATTCAAGGGCGC

Downstream 100 bases:

>100_bases
CGGCGTACGAGGGCGGCTGCTTCTGCGGACGGGTCCGCTTCCGCGCCGAGGGTGCGCCGGTGAACGTGCGCGTCTGCCAC
TGCCGCATGTGCCAGAGGGT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MTTTPDWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQATDLALTLKPHLADMAAAAG
AAGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREAHPRIDVEIAVSNRVEDLSRRDADIAVRMARPTQNAIVAKK
VGDIGFGFYATPRYLERHGVPDDLDALGAHTLIGYDRSPPPKGIGVDIGRPITRDIFALRTDNDVAQLALLKAGFGIGVC
QHQIGRRAGLVHVLPGAFQFRLEIWICMHEALRGAPRMRAMFDHLAAELAGYAAEAG

Sequences:

>Translated_297_residues
MTTTPDWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQATDLALTLKPHLADMAAAAG
AAGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREAHPRIDVEIAVSNRVEDLSRRDADIAVRMARPTQNAIVAKK
VGDIGFGFYATPRYLERHGVPDDLDALGAHTLIGYDRSPPPKGIGVDIGRPITRDIFALRTDNDVAQLALLKAGFGIGVC
QHQIGRRAGLVHVLPGAFQFRLEIWICMHEALRGAPRMRAMFDHLAAELAGYAAEAG
>Mature_296_residues
TTTPDWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQATDLALTLKPHLADMAAAAGA
AGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREAHPRIDVEIAVSNRVEDLSRRDADIAVRMARPTQNAIVAKKV
GDIGFGFYATPRYLERHGVPDDLDALGAHTLIGYDRSPPPKGIGVDIGRPITRDIFALRTDNDVAQLALLKAGFGIGVCQ
HQIGRRAGLVHVLPGAFQFRLEIWICMHEALRGAPRMRAMFDHLAAELAGYAAEAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=181, Percent_Identity=25.9668508287293, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI145693193, Length=190, Percent_Identity=27.8947368421053, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789639, Length=214, Percent_Identity=22.8971962616822, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787589, Length=190, Percent_Identity=25.2631578947368, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=31.8840579710145, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082132, Length=165, Percent_Identity=26.6666666666667, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=162, Percent_Identity=22.8395061728395, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31893; Mature: 31762

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTPDWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQ
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC
ATDLALTLKPHLADMAAAAGAAGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREA
EECEEEEECHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEHHHHHHCHHHHHHHHHHHHHH
HPRIDVEIAVSNRVEDLSRRDADIAVRMARPTQNAIVAKKVGDIGFGFYATPRYLERHGV
CCCEEEEEEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCC
PDDLDALGAHTLIGYDRSPPPKGIGVDIGRPITRDIFALRTDNDVAQLALLKAGFGIGVC
CCCHHHHCCHHEECCCCCCCCCCCCCCCCCCHHHHHEEEECCCHHHHHHHHHHCCCHHHH
QHQIGRRAGLVHVLPGAFQFRLEIWICMHEALRGAPRMRAMFDHLAAELAGYAAEAG
HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTTPDWDLLQSLHAVLEAGSFSAAARLRRLTQPTLGRHIDQLERQLGAPLFLRSPRGLQ
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC
ATDLALTLKPHLADMAAAAGAAGRDAAGAADHAGGVVRVAASEIMGAEVLPPILARFREA
EECEEEEECHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEHHHHHHCHHHHHHHHHHHHHH
HPRIDVEIAVSNRVEDLSRRDADIAVRMARPTQNAIVAKKVGDIGFGFYATPRYLERHGV
CCCEEEEEEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCC
PDDLDALGAHTLIGYDRSPPPKGIGVDIGRPITRDIFALRTDNDVAQLALLKAGFGIGVC
CCCHHHHCCHHEECCCCCCCCCCCCCCCCCCHHHHHEEEECCCHHHHHHHHHHCCCHHHH
QHQIGRRAGLVHVLPGAFQFRLEIWICMHEALRGAPRMRAMFDHLAAELAGYAAEAG
HHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]