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The map label for this gene is rarD [H]

Identifier: 197103564

GI number: 197103564

Start: 91179

End: 92111

Strand: Reverse

Name: rarD [H]

Synonym: PHZ_c0098

Alternate gene names: 197103564

Gene position: 92111-91179 (Counterclockwise)

Preceding gene: 197103565

Following gene: 197103557

Centisome position: 2.3

GC content: 72.45

Gene sequence:

>933_bases
ATGGCTCCGTCCGCGTCCGACGGTGAAGGCCGTCTGGCGCTGACGGCGGGAATCGTCTGCTACCTGATCTGGGGGTTCGT
CCCGCTGGCCTTCCAGGCCATCGGGGCCCTCGGCGTGGGATCGTGGGAGATGCTCTCCCACCGGATCCTCTGGAGCGCGC
CCGCCGCGGCGCTCTTCGTGCTGCTCGCCCGCCAGGCGGCCGAGGCGCGGGCCGTGCTGCGCCAGCCCCGCGTGCTGGGC
TGGCTGGCGGTCTCGTCCGTGCTGATCGCCACGAACTGGGTGGTGTTCATCTGGGCGGTGAACTCGGGCCGCCTGCTGGA
GACCTCGCTCGGCTACTACATCAACCCTCTGGTCAACATGGCCGCCGGGGCGCTGATCTTCCGCGAGCGCATCGACCGCA
TCGGTCAGGCGGCGATCGCCCTGGCCCTCGTCGGCGTGCTCGTCCAGACGGCGGCGCTGGGCCATCTGCCCTGGGTGTCG
CTGGTGCTGGCCTTCAGCTTCGGCGGCTACGGGATCGTGCGCAAGCGCGTCTCGGCCTCCGCCCAGACGGGGCTCCTGTG
GGAGTGCCTGATCCTGGGCCTGCCCAGTCTGGCGCTGATCCTCTGGCTGCAGGCGCGCGGCGAGGGCCACTTCACGGCCG
GGCCGGTCGAGGCCGCCTGGCTGATCGCCTCGGGCCCGATCACCGCCGCGCCGCTGGCGCTGTTCGCCTGGGCCGCCCGC
CGGCTCCCGCTGTCGGCCATGGGGTTCCTGCAGTTCCTGGCGCCCACCATCAGCTTCTGCATCGGCCTCCTTCAGGGCGA
GGCGTTCACGCCGCTGCGGGCGATCTCCTTCGCCTTCATATGGGCGGGGGCCGCCGTCTTCCTCTACGGCGCATGGCGGC
GCTCGCGCGCGGTGCGGGTCGCGATCGCCACGACGGCGGCCGCGCGGAAGTAG

Upstream 100 bases:

>100_bases
CCGACAACCTGCGCAAGGGCGCGGCCCTGAACGCGGTGCAGATCGCCGAGCTGCTCCACCAGCGCGGCCTGATCCGCCAG
AAGGCGATCGCTTAAGACCC

Downstream 100 bases:

>100_bases
CGAGGGCGCTAGCTCAGCGCCTTCTCCATCACCGAGAGCGCGAGCGGCGGGTCGAGGGCCACCGGGAACGGCCGGCTCTC
GCCCGTCCGCCGGTAGCCCC

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MAPSASDGEGRLALTAGIVCYLIWGFVPLAFQAIGALGVGSWEMLSHRILWSAPAAALFVLLARQAAEARAVLRQPRVLG
WLAVSSVLIATNWVVFIWAVNSGRLLETSLGYYINPLVNMAAGALIFRERIDRIGQAAIALALVGVLVQTAALGHLPWVS
LVLAFSFGGYGIVRKRVSASAQTGLLWECLILGLPSLALILWLQARGEGHFTAGPVEAAWLIASGPITAAPLALFAWAAR
RLPLSAMGFLQFLAPTISFCIGLLQGEAFTPLRAISFAFIWAGAAVFLYGAWRRSRAVRVAIATTAAARK

Sequences:

>Translated_310_residues
MAPSASDGEGRLALTAGIVCYLIWGFVPLAFQAIGALGVGSWEMLSHRILWSAPAAALFVLLARQAAEARAVLRQPRVLG
WLAVSSVLIATNWVVFIWAVNSGRLLETSLGYYINPLVNMAAGALIFRERIDRIGQAAIALALVGVLVQTAALGHLPWVS
LVLAFSFGGYGIVRKRVSASAQTGLLWECLILGLPSLALILWLQARGEGHFTAGPVEAAWLIASGPITAAPLALFAWAAR
RLPLSAMGFLQFLAPTISFCIGLLQGEAFTPLRAISFAFIWAGAAVFLYGAWRRSRAVRVAIATTAAARK
>Mature_309_residues
APSASDGEGRLALTAGIVCYLIWGFVPLAFQAIGALGVGSWEMLSHRILWSAPAAALFVLLARQAAEARAVLRQPRVLGW
LAVSSVLIATNWVVFIWAVNSGRLLETSLGYYINPLVNMAAGALIFRERIDRIGQAAIALALVGVLVQTAALGHLPWVSL
VLAFSFGGYGIVRKRVSASAQTGLLWECLILGLPSLALILWLQARGEGHFTAGPVEAAWLIASGPITAAPLALFAWAARR
LPLSAMGFLQFLAPTISFCIGLLQGEAFTPLRAISFAFIWAGAAVFLYGAWRRSRAVRVAIATTAAARK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=291, Percent_Identity=39.5189003436426, Blast_Score=191, Evalue=7e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33004; Mature: 32873

Theoretical pI: Translated: 11.42; Mature: 11.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSASDGEGRLALTAGIVCYLIWGFVPLAFQAIGALGVGSWEMLSHRILWSAPAAALFV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHH
LLARQAAEARAVLRQPRVLGWLAVSSVLIATNWVVFIWAVNSGRLLETSLGYYINPLVNM
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEEEECCCCEEHHHCCHHHHHHHHH
AAGALIFRERIDRIGQAAIALALVGVLVQTAALGHLPWVSLVLAFSFGGYGIVRKRVSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCC
AQTGLLWECLILGLPSLALILWLQARGEGHFTAGPVEAAWLIASGPITAAPLALFAWAAR
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
RLPLSAMGFLQFLAPTISFCIGLLQGEAFTPLRAISFAFIWAGAAVFLYGAWRRSRAVRV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
AIATTAAARK
EEEEHHHCCC
>Mature Secondary Structure 
APSASDGEGRLALTAGIVCYLIWGFVPLAFQAIGALGVGSWEMLSHRILWSAPAAALFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHH
LLARQAAEARAVLRQPRVLGWLAVSSVLIATNWVVFIWAVNSGRLLETSLGYYINPLVNM
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEEEECCCCEEHHHCCHHHHHHHHH
AAGALIFRERIDRIGQAAIALALVGVLVQTAALGHLPWVSLVLAFSFGGYGIVRKRVSAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCC
AQTGLLWECLILGLPSLALILWLQARGEGHFTAGPVEAAWLIASGPITAAPLALFAWAAR
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
RLPLSAMGFLQFLAPTISFCIGLLQGEAFTPLRAISFAFIWAGAAVFLYGAWRRSRAVRV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
AIATTAAARK
EEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA