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The map label for this gene is ybbN [H]

Identifier: 197103485

GI number: 197103485

Start: 16245

End: 17156

Strand: Direct

Name: ybbN [H]

Synonym: PHZ_c0019

Alternate gene names: 197103485

Gene position: 16245-17156 (Clockwise)

Preceding gene: 197103484

Following gene: 197103486

Centisome position: 0.41

GC content: 71.71

Gene sequence:

>912_bases
ATGACCCTGATCGGGGAAACCGGCGGCGCGCCGACGGGCGACGTCAACAAGGCCGAGATCATCAAGGACGGAACGGACGC
CAGCTTCATGGCCGACGTGGTGGAGGCCTCGAAGACCACGCCGGTCATCGTGGACTTCTGGGCCACCTGGTGCGGCCCGT
GCCGCCAGCTGGGCCCGGCGCTGGAGAAGGCGGTGACCGCCGCCAAGGGCGCGGTGAAGCTGGTCAAGGTCGACATCGAC
CGCAACCCGGCCTTCGCCGGCCAGCTGCGGGTGCAGTCGATCCCGGCGGTGTTCGCCTTCGTGGACGGCCGGCCGGTGGA
CGGCTTCATGGGCGCGCTGCCCGAGAGCCAGGTGAAGCAGTTCGTCGACCGCCTGGCCAAGCAGGGCGGCGGCGATCCGA
TCGAGCAGATGCTGGAGATGGCCAGGGAGTCGCTCGAGCTGGGCGACATGGGCGGCGCGGCCCAGGCCTACGCCCAGATC
CTGCAGGCCGATCCGCAGAACGTGAAGGCGCTGGGCGGCCTCGCCCGCCTCTACCAGCAGTCGGGCGACCTGGAGCGCGC
CCGCGAGGTGCTGGAGATGGCCCCCGAGGGCGCCAAGGACCCCGACCTCGACGCCGTCCGCGCCGCCCTGGCCCTGGCCG
AGGAGGCCCCGTCCGAAACCGCCGAGTTCGAGCAGCGCCTGGCCGCCGACCCCGACGATCACGAGGCGCGCTTCGAGTTC
GCCAAGGCGCTGGCCGGCTCGGGCCGGATGATGGAGGCCGTGGACGAGCTGATCGAGATCGTCCGCCGCGACCGCGCCTG
GAACGACGAGGCCGCCCGCAAGCAGCTCCTCACCATCTTCGAGGCCGCGGGTCCGACCTCGGAGGTCGCCAAGCAGGGCC
GGCGCAAGCTCTCCTCCCTGCTGTTCAGCTAG

Upstream 100 bases:

>100_bases
GGAGAACGCCTGAGCGCCCTGCGTTGAAGCCGGGCCGTCTTGCGACCATCTTGGACGCAAGGCGTTTTGTCAGCGCAGTG
GGACAAGGGAACTTCGGGCG

Downstream 100 bases:

>100_bases
GGAGGCGGGCGCCATGGCCGCCTATCGCAGAGCCGCCGACCTGCCGCAGGTGATTCCGGTCTTTCCCCTGGACGGCGCAT
TGCTGCTGCCGGGCGGGGAC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTLIGETGGAPTGDVNKAEIIKDGTDASFMADVVEASKTTPVIVDFWATWCGPCRQLGPALEKAVTAAKGAVKLVKVDID
RNPAFAGQLRVQSIPAVFAFVDGRPVDGFMGALPESQVKQFVDRLAKQGGGDPIEQMLEMARESLELGDMGGAAQAYAQI
LQADPQNVKALGGLARLYQQSGDLERAREVLEMAPEGAKDPDLDAVRAALALAEEAPSETAEFEQRLAADPDDHEARFEF
AKALAGSGRMMEAVDELIEIVRRDRAWNDEAARKQLLTIFEAAGPTSEVAKQGRRKLSSLLFS

Sequences:

>Translated_303_residues
MTLIGETGGAPTGDVNKAEIIKDGTDASFMADVVEASKTTPVIVDFWATWCGPCRQLGPALEKAVTAAKGAVKLVKVDID
RNPAFAGQLRVQSIPAVFAFVDGRPVDGFMGALPESQVKQFVDRLAKQGGGDPIEQMLEMARESLELGDMGGAAQAYAQI
LQADPQNVKALGGLARLYQQSGDLERAREVLEMAPEGAKDPDLDAVRAALALAEEAPSETAEFEQRLAADPDDHEARFEF
AKALAGSGRMMEAVDELIEIVRRDRAWNDEAARKQLLTIFEAAGPTSEVAKQGRRKLSSLLFS
>Mature_302_residues
TLIGETGGAPTGDVNKAEIIKDGTDASFMADVVEASKTTPVIVDFWATWCGPCRQLGPALEKAVTAAKGAVKLVKVDIDR
NPAFAGQLRVQSIPAVFAFVDGRPVDGFMGALPESQVKQFVDRLAKQGGGDPIEQMLEMARESLELGDMGGAAQAYAQIL
QADPQNVKALGGLARLYQQSGDLERAREVLEMAPEGAKDPDLDAVRAALALAEEAPSETAEFEQRLAADPDDHEARFEFA
KALAGSGRMMEAVDELIEIVRRDRAWNDEAARKQLLTIFEAAGPTSEVAKQGRRKLSSLLFS

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=105, Percent_Identity=44.7619047619048, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI87081747, Length=281, Percent_Identity=28.8256227758007, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082331, Length=99, Percent_Identity=37.3737373737374, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788936, Length=83, Percent_Identity=34.9397590361446, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212646193, Length=117, Percent_Identity=36.7521367521368, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI28573567, Length=121, Percent_Identity=30.5785123966942, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 32485; Mature: 32354

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS50293 TPR_REGION ; PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLIGETGGAPTGDVNKAEIIKDGTDASFMADVVEASKTTPVIVDFWATWCGPCRQLGPA
CCEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LEKAVTAAKGAVKLVKVDIDRNPAFAGQLRVQSIPAVFAFVDGRPVDGFMGALPESQVKQ
HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCHHEEECCCCCCHHHHCCCHHHHHH
FVDRLAKQGGGDPIEQMLEMARESLELGDMGGAAQAYAQILQADPQNVKALGGLARLYQQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SGDLERAREVLEMAPEGAKDPDLDAVRAALALAEEAPSETAEFEQRLAADPDDHEARFEF
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
AKALAGSGRMMEAVDELIEIVRRDRAWNDEAARKQLLTIFEAAGPTSEVAKQGRRKLSSL
HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LFS
HCC
>Mature Secondary Structure 
TLIGETGGAPTGDVNKAEIIKDGTDASFMADVVEASKTTPVIVDFWATWCGPCRQLGPA
CEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LEKAVTAAKGAVKLVKVDIDRNPAFAGQLRVQSIPAVFAFVDGRPVDGFMGALPESQVKQ
HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCHHEEECCCCCCHHHHCCCHHHHHH
FVDRLAKQGGGDPIEQMLEMARESLELGDMGGAAQAYAQILQADPQNVKALGGLARLYQQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SGDLERAREVLEMAPEGAKDPDLDAVRAALALAEEAPSETAEFEQRLAADPDDHEARFEF
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
AKALAGSGRMMEAVDELIEIVRRDRAWNDEAARKQLLTIFEAAGPTSEVAKQGRRKLSSL
HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LFS
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]