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The map label for this gene is rbgA [H]

Identifier: 195978101

GI number: 195978101

Start: 1014676

End: 1015530

Strand: Direct

Name: rbgA [H]

Synonym: Sez_0974

Alternate gene names: 195978101

Gene position: 1014676-1015530 (Clockwise)

Preceding gene: 195978100

Following gene: 195978102

Centisome position: 50.13

GC content: 40.7

Gene sequence:

>855_bases
ATGGCTACGATTCAATGGTTTCCTGGACACATGTCCAAGGCAAGAAGACAGGTACAGGAAAATATTAAGCATGTTGATTT
TGTGACGATTTTAGTAGACGCTAGGCTACCTTTATCAAGTCAAAATCCTATGCTGACCAAAATTGTTGGAGATAAGCCCA
AGCTAATGCTTCTTAATAAGGCTGATCTAGCAGATAACACGCATACTAAGAAATGGCAACAATATTATGAGAAGCAAGGG
ATTAAGACCTTAGCTATCAATGCTAAGGAACAGGCTACGGTCAAAAGGGTCACAGAGGCTGCTAAGGAATTGATGGCAGA
TAAGCTGCATCGCTTAAGAGAACGAGGCATTCAAAAAGAAACACTACGAACCATGATTATTGGCATTCCAAATGCTGGCA
AATCAACCTTGATGAATCGCTTGGCTGGCAAAAAAATTGCCACAGTAGGCAATAAGCCAGGGGTAACTAAGGGACAGCAG
TGGTTAAAGTCCAATAAAGAGCTAGAGATATTGGATACTCCAGGTATTTTATGGCCAAAATTTGAGGACGAATTGGTTGG
TTTAAAATTAGCCTTGACAGGGGCTATTAAGGACCAGCTGTTGCCAATGGACGAGGTCACGATTTTTGGATTGAATTATT
TTAAGAAGTATTATCCTAATCGCCTATTAAAGCGTTTTAAGGCTATTGATCTAGAGGCTGACGCTCCAGAAATCATCATG
TCCTTGACACGCCAGCTTGGCTTTAAGGAAGACTATGATCGTTTTTACAGCTTATTCATCAAGGATATTCGTGATGGAAG
ACTTGGCCAGTACACCTTAGATCAGGTTGGTGATGATGACAGCAATGACTATTAA

Upstream 100 bases:

>100_bases
GTCTGGAGATAATGCTTAATATTTGGTGATTTTTTGGTGACTCGCATGATTTTTAAAAGACGAGGGGCTACCCCCCTTGC
TACGAAAGGATTTTATACAC

Downstream 100 bases:

>100_bases
AGACCTTAAAGTTCGTCTAGAAGCTGTTTCTAGTCTTTCTGATCCATTTTTTGAAGAGCTAAAGGCGGATAAGCGGCTTG
GCGTTCAAAAGGCTGTATCT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKADLADNTHTKKWQQYYEKQG
IKTLAINAKEQATVKRVTEAAKELMADKLHRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQ
WLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKKYYPNRLLKRFKAIDLEADAPEIIM
SLTRQLGFKEDYDRFYSLFIKDIRDGRLGQYTLDQVGDDDSNDY

Sequences:

>Translated_284_residues
MATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKADLADNTHTKKWQQYYEKQG
IKTLAINAKEQATVKRVTEAAKELMADKLHRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQ
WLKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKKYYPNRLLKRFKAIDLEADAPEIIM
SLTRQLGFKEDYDRFYSLFIKDIRDGRLGQYTLDQVGDDDSNDY
>Mature_283_residues
ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNKADLADNTHTKKWQQYYEKQGI
KTLAINAKEQATVKRVTEAAKELMADKLHRLRERGIQKETLRTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQW
LKSNKELEILDTPGILWPKFEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKKYYPNRLLKRFKAIDLEADAPEIIMS
LTRQLGFKEDYDRFYSLFIKDIRDGRLGQYTLDQVGDDDSNDY

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=300, Percent_Identity=32, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI296317324, Length=178, Percent_Identity=29.7752808988764, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI9506611, Length=178, Percent_Identity=29.7752808988764, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=230, Percent_Identity=28.2608695652174, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17534827, Length=203, Percent_Identity=31.5270935960591, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25143545, Length=285, Percent_Identity=25.9649122807018, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI115535155, Length=285, Percent_Identity=25.9649122807018, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=187, Percent_Identity=27.807486631016, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323744, Length=221, Percent_Identity=27.6018099547511, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324381, Length=239, Percent_Identity=26.7782426778243, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321339, Length=208, Percent_Identity=26.4423076923077, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI85815858, Length=308, Percent_Identity=30.1948051948052, Blast_Score=120, Evalue=8e-28,
Organism=Drosophila melanogaster, GI28572990, Length=179, Percent_Identity=31.2849162011173, Blast_Score=85, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32509; Mature: 32378

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNK
CCEEEECCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC
ADLADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLHRLRERGIQKE
CCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLRTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQWLKSNKELEILDTPGILWPK
HHHHHHEECCCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCC
FEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKKYYPNRLLKRFKAIDLEADAPEIIM
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SLTRQLGFKEDYDRFYSLFIKDIRDGRLGQYTLDQVGDDDSNDY
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCC
>Mature Secondary Structure 
ATIQWFPGHMSKARRQVQENIKHVDFVTILVDARLPLSSQNPMLTKIVGDKPKLMLLNK
CEEEECCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEC
ADLADNTHTKKWQQYYEKQGIKTLAINAKEQATVKRVTEAAKELMADKLHRLRERGIQKE
CCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
TLRTMIIGIPNAGKSTLMNRLAGKKIATVGNKPGVTKGQQWLKSNKELEILDTPGILWPK
HHHHHHEECCCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCC
FEDELVGLKLALTGAIKDQLLPMDEVTIFGLNYFKKYYPNRLLKRFKAIDLEADAPEIIM
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SLTRQLGFKEDYDRFYSLFIKDIRDGRLGQYTLDQVGDDDSNDY
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]