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The map label for this gene is deoC

Identifier: 195978061

GI number: 195978061

Start: 972317

End: 972979

Strand: Direct

Name: deoC

Synonym: Sez_0934

Alternate gene names: 195978061

Gene position: 972317-972979 (Clockwise)

Preceding gene: 195978060

Following gene: 195978062

Centisome position: 48.04

GC content: 43.89

Gene sequence:

>663_bases
ATGAATATTAACAAGTATATTGACCACACACTACTAAAAGCTGACAGCGTTCAATCGCAGCTTGACCAATTAATTGAGGA
GGCTAAAGCCTATGACTTTGCTAGCGTTTGCGTCAATCCTTGCTGGGTAGCCTATGCTGCAAAGGCTTTAAAGGGAACAG
ATGTTAAGGTTTGTACAGTTGTTGGTTTTCCTTTAGGTGCAACTACCTCAGCAACAAAGGCCTTTGAAACAAAGGACGCT
ATTGAAAATGGTGCTGATGAGATTGATATGGTTATCAATATTGGTCTGTTAAAGCAGGGTGACTACCAAGCTGTTGAAGA
TGATATGCGTGCAGTGGTAGAGGCTAGTGGAGACAAATTAGTCAAGGTGATTATTGAGGCTTGTCTCTTGACTGATGATG
AAAAGGTTAAGGCTTGTCAGTTGGCGGTAAATGCAGGTGTTGACTTTGTGAAGACCTCTACTGGTTTTTCAACTGGCGGT
GCAACCGTTTCTGATGTCAAGCTAATGCGTCAAACAGTTGGTCCAGACATTGGCGTAAAGGCAGCTGGTGGTGCTCGTTC
TCTAGAGGACGCTTTAGCTTTTGTCGAAGCAGGAGCTACACGTATTGGAACTTCTGCAGGGGTAACGATTATGAAAGGTG
AAGTTGCCAATGGAGGCTACTGA

Upstream 100 bases:

>100_bases
GAAAAAGTGCTTACAGAATTTGAAAAAAATGTTAAAATAGGGGCGGAACACCTAGAGGCTAACGAAATTATCAAAATCAT
TTCCTAAGGAGGAGTATAAC

Downstream 100 bases:

>100_bases
TTTAGTTTCGTTAGCCATTGAAGCTAGTAAAAGGGCTTATGTGCCTTACTCACATTTCCCGATCGGAGCTGCTTTAAAGA
CAAAGGACGGAACAATCTAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNINKYIDHTLLKADSVQSQLDQLIEEAKAYDFASVCVNPCWVAYAAKALKGTDVKVCTVVGFPLGATTSATKAFETKDA
IENGADEIDMVINIGLLKQGDYQAVEDDMRAVVEASGDKLVKVIIEACLLTDDEKVKACQLAVNAGVDFVKTSTGFSTGG
ATVSDVKLMRQTVGPDIGVKAAGGARSLEDALAFVEAGATRIGTSAGVTIMKGEVANGGY

Sequences:

>Translated_220_residues
MNINKYIDHTLLKADSVQSQLDQLIEEAKAYDFASVCVNPCWVAYAAKALKGTDVKVCTVVGFPLGATTSATKAFETKDA
IENGADEIDMVINIGLLKQGDYQAVEDDMRAVVEASGDKLVKVIIEACLLTDDEKVKACQLAVNAGVDFVKTSTGFSTGG
ATVSDVKLMRQTVGPDIGVKAAGGARSLEDALAFVEAGATRIGTSAGVTIMKGEVANGGY
>Mature_220_residues
MNINKYIDHTLLKADSVQSQLDQLIEEAKAYDFASVCVNPCWVAYAAKALKGTDVKVCTVVGFPLGATTSATKAFETKDA
IENGADEIDMVINIGLLKQGDYQAVEDDMRAVVEASGDKLVKVIIEACLLTDDEKVKACQLAVNAGVDFVKTSTGFSTGG
ATVSDVKLMRQTVGPDIGVKAAGGARSLEDALAFVEAGATRIGTSAGVTIMKGEVANGGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=218, Percent_Identity=36.697247706422, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI1790841, Length=204, Percent_Identity=33.8235294117647, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=209, Percent_Identity=30.1435406698565, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI19922098, Length=200, Percent_Identity=31.5, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_STRE4 (C0M9B0)

Other databases:

- EMBL:   FM204883
- RefSeq:   YP_002746380.1
- ProteinModelPortal:   C0M9B0
- EnsemblBacteria:   EBSTRT00000067961
- GeneID:   7696816
- GenomeReviews:   FM204883_GR
- KEGG:   seu:SEQ_1059
- GeneTree:   EBGT00050000027905
- OMA:   GANTPEV
- ProtClustDB:   PRK00507
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 22976; Mature: 22976

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: ACT_SITE 151-151 ACT_SITE 180-180

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINKYIDHTLLKADSVQSQLDQLIEEAKAYDFASVCVNPCWVAYAAKALKGTDVKVCTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VGFPLGATTSATKAFETKDAIENGADEIDMVINIGLLKQGDYQAVEDDMRAVVEASGDKL
EECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCHHH
VKVIIEACLLTDDEKVKACQLAVNAGVDFVKTSTGFSTGGATVSDVKLMRQTVGPDIGVK
HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE
AAGGARSLEDALAFVEAGATRIGTSAGVTIMKGEVANGGY
CCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MNINKYIDHTLLKADSVQSQLDQLIEEAKAYDFASVCVNPCWVAYAAKALKGTDVKVCTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VGFPLGATTSATKAFETKDAIENGADEIDMVINIGLLKQGDYQAVEDDMRAVVEASGDKL
EECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCHHH
VKVIIEACLLTDDEKVKACQLAVNAGVDFVKTSTGFSTGGATVSDVKLMRQTVGPDIGVK
HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE
AAGGARSLEDALAFVEAGATRIGTSAGVTIMKGEVANGGY
CCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA