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The map label for this gene is glgB [H]

Identifier: 195977916

GI number: 195977916

Start: 818471

End: 820351

Strand: Direct

Name: glgB [H]

Synonym: Sez_0787

Alternate gene names: 195977916

Gene position: 818471-820351 (Clockwise)

Preceding gene: 195977915

Following gene: 195977917

Centisome position: 40.43

GC content: 42.96

Gene sequence:

>1881_bases
ATGGATAATGACTTAGCGCTTTATACCTTTGGCACAGGTGAGAATTTCCATGTACAGGATTATCTAGGTGTTCATCGTAT
TAACAATGACACAGGCACCAGCTATGTCTTTAGGGTATGGGCGCCCAATGCAGAGGCTGTCAGCTTGATTGGAGATTTTA
CTGATTGGCAGTCCAATCCACTTGAGATGAGCCGAAATGAGGCTGGTGTGTGGGAGCTTGTCACTAGTCTGCCTCATGAA
GGAGATATTTATAAGTACTGGGTTAGGCGCCAAGGTGGTCAGCTTGTTGAAAAAATTGATCCAGTGGCCTTTCTATTTGA
AGCTAGACCAGGAACGGGTGCTATTGTCAAAACCCTTCCGGTTAAAAAATGGCGTGATAGCTTATGGCTGGGACGGCGAA
AGCGTTTTGGCTTTAGGCAGCGTCCAGTTAATATCTATGAGGTTCATGCCCATTCATGGAAAAAAGACGAAAACGCAAGG
CCTTATGACTTTAGCAAGCTGAAAGAAGAGCTCATTCCCTATCTCAAGAGCATGCACTACACTCATGTTGAATTTATGCC
GGTCATGGCTCACCCCTTAGACATGAGCTGGGGTTATCAGCTGATGGGTTACTTTGCCTTTGAGTCAACCTTTGGAAGCC
CAGAAGCCTTTCAGGATTTTGTTGAGGCTTGTCATCTTAATAATATTGGTGTCTTGATCGACTGGGTACCAGGGCATTTT
ACACAAAATGATGACGCCTTAGCTTATTTTGACGGTACAGCTACCTATGAATATCAGGATCACCATCGTGCTCATAATTA
TGGCTGGGGGGCCCTAAATTTTGATTTGGGTAAAACTCAGGTACAGTCCTTTTTGATTTCAAGTGCCCTTTTTTGGCTGG
AGGCTTATCATGTTGATGGTATTCGAGTAGATGCTGTTAGCAATATGCTTTACTTGGATTATGATCAGGGTCCTTGGACT
CCCAATCAATACGGAGGCAATCAAAACCTTGAGGGGATAGCCTTTCTTCAAAAATTAACCACAGTTATCAAGGAAAAACA
CCCTGATGTGATGATGATTGCGGAGGAGGCGACCTCAGCTACCCCAATAACAAGCCCTGTTGCAGAAGGTGGACTAGGCT
TTGATTATAAGTGGAATATGGGCTGGATGAATGATATTCTTAGGTTTTACGAAGAGGACCCTTATTATCGAAAATACGAT
TTCAATCTCTTAACCTTTAGTTTTATGTATTGCTTTAAGGAGCATTACATTTTACCCTTTTCTCACGATGAGGTTGTTCA
TGGCAAAAAAAGCCTCATGCATAAAATGTGGGGGGACCGCTACAATCAATTTGCAGGCCTAAGAAATCTTTACACCTATC
AAATCTGCCACCCAGGCAAGAAGCTGCTTTTTATGGGATCTGAGTTTGGACAGTTTTTGGAATGGAAATACGATCATCAA
TTAGAGTGGCAAAATTTAGAGGACGAGCTCAATGCTAAAATGCAGCATTTCACAGCCAGCCTAAATCAGCTATATAAGGA
CCATAGCATGCTGTGGCAAAATGATGAAACCTATGACGGCATTGATATTATTGATGCAGACAATAAGGACGAATCAGTCT
TGTCGTTTTGTCGTAAAAACAATAAAGGAGAGCTCTTGCTTTGTGTCTTTAATATGACACCTGTTGAAAGACCAGGCTTT
ACCATAGGTGTGCCGATAGCAGGTCTTTACGAAGAAATTTTCAATACAGAGCTTGAGGCCTTTGGAGGTGTCTGGAAGGA
GCACAATCCCTTAACCAACACAGTAGCCAAGAAATGGAAGACTTATCCGCAGACCCTGAGCTTTACCCTGCCTGCCTTAG
GAGCAAGCATCTGGAAAATCAAGCGTCGTCAGAAGCAATAA

Upstream 100 bases:

>100_bases
GCTGTAGTCACAGTTAGCAGAGACCTATTAGGACCTTGCTTATCATATCGCTTAGCGCCTTGAAAAAGGGTTTAGGAGTA
GGGAAAGAAGAGGTGATGGG

Downstream 100 bases:

>100_bases
GCTATTCACTGCTTACTTAGCTGTTTCAACCAAGAAGTCACTATAGTCATGAAAGGATAACGAAATGAAGAATGGAATGT
TAGCCCTCATTTTAGCAGGG

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 626; Mature: 626

Protein sequence:

>626_residues
MDNDLALYTFGTGENFHVQDYLGVHRINNDTGTSYVFRVWAPNAEAVSLIGDFTDWQSNPLEMSRNEAGVWELVTSLPHE
GDIYKYWVRRQGGQLVEKIDPVAFLFEARPGTGAIVKTLPVKKWRDSLWLGRRKRFGFRQRPVNIYEVHAHSWKKDENAR
PYDFSKLKEELIPYLKSMHYTHVEFMPVMAHPLDMSWGYQLMGYFAFESTFGSPEAFQDFVEACHLNNIGVLIDWVPGHF
TQNDDALAYFDGTATYEYQDHHRAHNYGWGALNFDLGKTQVQSFLISSALFWLEAYHVDGIRVDAVSNMLYLDYDQGPWT
PNQYGGNQNLEGIAFLQKLTTVIKEKHPDVMMIAEEATSATPITSPVAEGGLGFDYKWNMGWMNDILRFYEEDPYYRKYD
FNLLTFSFMYCFKEHYILPFSHDEVVHGKKSLMHKMWGDRYNQFAGLRNLYTYQICHPGKKLLFMGSEFGQFLEWKYDHQ
LEWQNLEDELNAKMQHFTASLNQLYKDHSMLWQNDETYDGIDIIDADNKDESVLSFCRKNNKGELLLCVFNMTPVERPGF
TIGVPIAGLYEEIFNTELEAFGGVWKEHNPLTNTVAKKWKTYPQTLSFTLPALGASIWKIKRRQKQ

Sequences:

>Translated_626_residues
MDNDLALYTFGTGENFHVQDYLGVHRINNDTGTSYVFRVWAPNAEAVSLIGDFTDWQSNPLEMSRNEAGVWELVTSLPHE
GDIYKYWVRRQGGQLVEKIDPVAFLFEARPGTGAIVKTLPVKKWRDSLWLGRRKRFGFRQRPVNIYEVHAHSWKKDENAR
PYDFSKLKEELIPYLKSMHYTHVEFMPVMAHPLDMSWGYQLMGYFAFESTFGSPEAFQDFVEACHLNNIGVLIDWVPGHF
TQNDDALAYFDGTATYEYQDHHRAHNYGWGALNFDLGKTQVQSFLISSALFWLEAYHVDGIRVDAVSNMLYLDYDQGPWT
PNQYGGNQNLEGIAFLQKLTTVIKEKHPDVMMIAEEATSATPITSPVAEGGLGFDYKWNMGWMNDILRFYEEDPYYRKYD
FNLLTFSFMYCFKEHYILPFSHDEVVHGKKSLMHKMWGDRYNQFAGLRNLYTYQICHPGKKLLFMGSEFGQFLEWKYDHQ
LEWQNLEDELNAKMQHFTASLNQLYKDHSMLWQNDETYDGIDIIDADNKDESVLSFCRKNNKGELLLCVFNMTPVERPGF
TIGVPIAGLYEEIFNTELEAFGGVWKEHNPLTNTVAKKWKTYPQTLSFTLPALGASIWKIKRRQKQ
>Mature_626_residues
MDNDLALYTFGTGENFHVQDYLGVHRINNDTGTSYVFRVWAPNAEAVSLIGDFTDWQSNPLEMSRNEAGVWELVTSLPHE
GDIYKYWVRRQGGQLVEKIDPVAFLFEARPGTGAIVKTLPVKKWRDSLWLGRRKRFGFRQRPVNIYEVHAHSWKKDENAR
PYDFSKLKEELIPYLKSMHYTHVEFMPVMAHPLDMSWGYQLMGYFAFESTFGSPEAFQDFVEACHLNNIGVLIDWVPGHF
TQNDDALAYFDGTATYEYQDHHRAHNYGWGALNFDLGKTQVQSFLISSALFWLEAYHVDGIRVDAVSNMLYLDYDQGPWT
PNQYGGNQNLEGIAFLQKLTTVIKEKHPDVMMIAEEATSATPITSPVAEGGLGFDYKWNMGWMNDILRFYEEDPYYRKYD
FNLLTFSFMYCFKEHYILPFSHDEVVHGKKSLMHKMWGDRYNQFAGLRNLYTYQICHPGKKLLFMGSEFGQFLEWKYDHQ
LEWQNLEDELNAKMQHFTASLNQLYKDHSMLWQNDETYDGIDIIDADNKDESVLSFCRKNNKGELLLCVFNMTPVERPGF
TIGVPIAGLYEEIFNTELEAFGGVWKEHNPLTNTVAKKWKTYPQTLSFTLPALGASIWKIKRRQKQ

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=612, Percent_Identity=24.5098039215686, Blast_Score=156, Evalue=4e-38,
Organism=Escherichia coli, GI1789839, Length=617, Percent_Identity=38.8978930307942, Blast_Score=447, Evalue=1e-126,
Organism=Caenorhabditis elegans, GI17554896, Length=608, Percent_Identity=25.6578947368421, Blast_Score=161, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI32564391, Length=496, Percent_Identity=26.008064516129, Blast_Score=140, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6320826, Length=667, Percent_Identity=24.1379310344828, Blast_Score=150, Evalue=8e-37,
Organism=Drosophila melanogaster, GI28573410, Length=597, Percent_Identity=24.7906197654941, Blast_Score=158, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 72901; Mature: 72901

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNDLALYTFGTGENFHVQDYLGVHRINNDTGTSYVFRVWAPNAEAVSLIGDFTDWQSNP
CCCCEEEEEECCCCCEEEHHHHCEEEECCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
LEMSRNEAGVWELVTSLPHEGDIYKYWVRRQGGQLVEKIDPVAFLFEARPGTGAIVKTLP
CCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHCCCEEEEEECCCCCCCEEEECC
VKKWRDSLWLGRRKRFGFRQRPVNIYEVHAHSWKKDENARPYDFSKLKEELIPYLKSMHY
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
THVEFMPVMAHPLDMSWGYQLMGYFAFESTFGSPEAFQDFVEACHLNNIGVLIDWVPGHF
CCEEEEEHHCCCCCCCCCHHHHEEEEHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC
TQNDDALAYFDGTATYEYQDHHRAHNYGWGALNFDLGKTQVQSFLISSALFWLEAYHVDG
CCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
IRVDAVSNMLYLDYDQGPWTPNQYGGNQNLEGIAFLQKLTTVIKEKHPDVMMIAEEATSA
EEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
TPITSPVAEGGLGFDYKWNMGWMNDILRFYEEDPYYRKYDFNLLTFSFMYCFKEHYILPF
CCCCCHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCEEECC
SHDEVVHGKKSLMHKMWGDRYNQFAGLRNLYTYQICHPGKKLLFMGSEFGQFLEWKYDHQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEEEEECCHHHHHHCCCCCCC
LEWQNLEDELNAKMQHFTASLNQLYKDHSMLWQNDETYDGIDIIDADNKDESVLSFCRKN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCC
NKGELLLCVFNMTPVERPGFTIGVPIAGLYEEIFNTELEAFGGVWKEHNPLTNTVAKKWK
CCCCEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
TYPQTLSFTLPALGASIWKIKRRQKQ
CCCHHHEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDNDLALYTFGTGENFHVQDYLGVHRINNDTGTSYVFRVWAPNAEAVSLIGDFTDWQSNP
CCCCEEEEEECCCCCEEEHHHHCEEEECCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
LEMSRNEAGVWELVTSLPHEGDIYKYWVRRQGGQLVEKIDPVAFLFEARPGTGAIVKTLP
CCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHCCCEEEEEECCCCCCCEEEECC
VKKWRDSLWLGRRKRFGFRQRPVNIYEVHAHSWKKDENARPYDFSKLKEELIPYLKSMHY
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
THVEFMPVMAHPLDMSWGYQLMGYFAFESTFGSPEAFQDFVEACHLNNIGVLIDWVPGHF
CCEEEEEHHCCCCCCCCCHHHHEEEEHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC
TQNDDALAYFDGTATYEYQDHHRAHNYGWGALNFDLGKTQVQSFLISSALFWLEAYHVDG
CCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
IRVDAVSNMLYLDYDQGPWTPNQYGGNQNLEGIAFLQKLTTVIKEKHPDVMMIAEEATSA
EEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
TPITSPVAEGGLGFDYKWNMGWMNDILRFYEEDPYYRKYDFNLLTFSFMYCFKEHYILPF
CCCCCHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCEEECC
SHDEVVHGKKSLMHKMWGDRYNQFAGLRNLYTYQICHPGKKLLFMGSEFGQFLEWKYDHQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEEEEECCHHHHHHCCCCCCC
LEWQNLEDELNAKMQHFTASLNQLYKDHSMLWQNDETYDGIDIIDADNKDESVLSFCRKN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCC
NKGELLLCVFNMTPVERPGFTIGVPIAGLYEEIFNTELEAFGGVWKEHNPLTNTVAKKWK
CCCCEEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
TYPQTLSFTLPALGASIWKIKRRQKQ
CCCHHHEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12397186 [H]