Click here to switch to the map view.

The map label for this gene is nrdF [H]

Identifier: 195977665

GI number: 195977665

Start: 547910

End: 548923

Strand: Direct

Name: nrdF [H]

Synonym: Sez_0524

Alternate gene names: 195977665

Gene position: 547910-548923 (Clockwise)

Preceding gene: 195977664

Following gene: 195977666

Centisome position: 27.07

GC content: 44.38

Gene sequence:

>1014_bases
ATGACCCAATATTATTACGACCGATCACAGTCACCCATTGACTATGCCTTGTCTCAAACCAAAAAAAGTTTGCGCTCTGT
CAACTGGAATCAGCTTAATGACGACAAGGACCTTGAGGTCTGGAACCGAGTGACGCAAAATTTTTGGCTGCCTGAGAAGG
TTCCTGTTTCTAATGACCTTAATTCTTGGCGTTCTTTGGGGGAGGATTGGCAAAGGCTAATCACAAGAACCTATACCGGC
TTGACCTTGCTAGATACGGTTCAAGCAACAGTTGGAGATGTAGCACAAATTCAACATTCCCTGACCGATCATGAGCAGGT
GATTTATACTAATTTTGCCTTTATGGTTGCTATTCACGCTAGGTCCTATGGAACAATCTTTTCGACCCTGTGCAGCAGTC
AGCAGATCGAGGAGGCCCACGATTGGGTGGTGTCAACAGAGAGCTTACAGGAGCGAGCGCGTGTGTTGATTCCGTATTAT
ACTGGTGATGATCCTCTAAAGTCTAAGGTTGCAGCAGCTATGATGCCTGGCTTTTTGCTGTATGGTGGCTTTTACCTTCC
TTTTTACCTGTCAGCTAGAGGGAAAATGCCCAATACCTCAGACATTATTCGCTTAATCCTGAGAGATAAGGTTATTCACA
ATTATTACAGTGGCTACAAGTATCAACAAAAGGTGGCAGCCCTAAGTCCTGAAAAGCAGGCTGAGATGAAGGCCTTTGTG
TTTGATCTGCTTTATCAGCTGATTGATTTGGAGAAGGCTTACCTGAGGGAATTGTATGACGGCTTTGATCTTGCTGACGA
TGCGATTCGCTTTAGTGTCTATAATGCCGGAAAATTTTTGCAAAATCTAGGGTATGATTCTCCCTTTACTGAGGAGGAAA
CACGTATTTCCCCTGAGGTATTTGCTCAGCTATCAGCGCGAGCAGATGAGAACCATGACTTTTTCTCAGGAAATGGCTCT
TCTTACGTGATGGGAGTTACTGAGGAAACCACTGATGACGATTGGGAGTTTTAA

Upstream 100 bases:

>100_bases
GCCTAAATGTGAGCTTAGCAGTCTTCCCTAGTCCTAAAGCTGTAGAAGGCTTGGCAGCTGAAGGATTGATATTGCGACTA
TCAAGCTTGAAGGAGAAAAC

Downstream 100 bases:

>100_bases
GATGGCTGCAAGGGTAATGCTTGTTTATTTTTCATCACGATCTAATAATACTCACCGCTTTGTACAAAAGCTAGATGCAA
AGGCCCTCAGGATTCCAATT

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTQYYYDRSQSPIDYALSQTKKSLRSVNWNQLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQRLITRTYTG
LTLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHDWVVSTESLQERARVLIPYY
TGDDPLKSKVAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFV
FDLLYQLIDLEKAYLRELYDGFDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQLSARADENHDFFSGNGS
SYVMGVTEETTDDDWEF

Sequences:

>Translated_337_residues
MTQYYYDRSQSPIDYALSQTKKSLRSVNWNQLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQRLITRTYTG
LTLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHDWVVSTESLQERARVLIPYY
TGDDPLKSKVAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFV
FDLLYQLIDLEKAYLRELYDGFDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQLSARADENHDFFSGNGS
SYVMGVTEETTDDDWEF
>Mature_336_residues
TQYYYDRSQSPIDYALSQTKKSLRSVNWNQLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQRLITRTYTGL
TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHDWVVSTESLQERARVLIPYYT
GDDPLKSKVAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVF
DLLYQLIDLEKAYLRELYDGFDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQLSARADENHDFFSGNGSS
YVMGVTEETTDDDWEF

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=314, Percent_Identity=50.9554140127389, Blast_Score=350, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 38877; Mature: 38746

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQYYYDRSQSPIDYALSQTKKSLRSVNWNQLNDDKDLEVWNRVTQNFWLPEKVPVSNDL
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
NSWRSLGEDWQRLITRTYTGLTLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEHH
RSYGTIFSTLCSSQQIEEAHDWVVSTESLQERARVLIPYYTGDDPLKSKVAAAMMPGFLL
HHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH
YGGFYLPFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFV
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
FDLLYQLIDLEKAYLRELYDGFDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEV
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEHHHHHHHHHHCCCCCCCCCHHHCCCHHH
FAQLSARADENHDFFSGNGSSYVMGVTEETTDDDWEF
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
TQYYYDRSQSPIDYALSQTKKSLRSVNWNQLNDDKDLEVWNRVTQNFWLPEKVPVSNDL
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
NSWRSLGEDWQRLITRTYTGLTLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEHH
RSYGTIFSTLCSSQQIEEAHDWVVSTESLQERARVLIPYYTGDDPLKSKVAAAMMPGFLL
HHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHH
YGGFYLPFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFV
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
FDLLYQLIDLEKAYLRELYDGFDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEV
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEHHHHHHHHHHCCCCCCCCCHHHCCCHHH
FAQLSARADENHDFFSGNGSSYVMGVTEETTDDDWEF
HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]