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The map label for this gene is codY [H]

Identifier: 195977530

GI number: 195977530

Start: 415432

End: 416214

Strand: Direct

Name: codY [H]

Synonym: Sez_0387

Alternate gene names: 195977530

Gene position: 415432-416214 (Clockwise)

Preceding gene: 195977528

Following gene: 195977531

Centisome position: 20.52

GC content: 42.02

Gene sequence:

>783_bases
ATGCCAAATTTATTACAAAAAACTCGTAAGATTACTTCTATTTTGCAACGTTCTGTAGACAGCTTGGAAACAGAGCTACC
ATATAATACGATGGCTTCACGCTTAGCAGATATTATTGATTGTAATGCTTGTATCATCAATGGTGGTGGCAGCTTACTTG
GCTATGCGATGAAGTACAAGACCAACACAGACCGCGTCGAGGAATTTTTTGAAACAAGACAGTTCCCAGATGCTTATGTC
AAGGCAGCTAGTCGTGTTTATGACACTGAAGCAAACCTTTCTGTGGAAAATGAACTAACGATTTTTCCTGTTGAGTCAAA
GGATATCTATCCTGATGGTTTAACCACGATTGCCCCTATCTATGGTGGCGGCATGCGCTTAGGTACCTTGATCATCTGGC
GTAACGACAATGAATTCAGTGATGATGACCTTGTTTTAGTTGAAATCTCAAGCACTGTGGTCGGTATCCAGCTGTTAAAT
CTCCAGACCGAAAACCTAGAAGAAACCATTCGTAAGCAGACAGCTGTTAATATGGCAATCAACACTCTATCTTACTCTGA
AATGAAGGCTGTTGCAGCTATCCTTAGTGAGCTAGATGGCAATGAAGGACGCCTGACCGCTTCAGTGATTGCAGATCGTA
TTGGAATCACACGATCTGTCATCGTGAATGCCCTTAGAAAGCTAGAGAGTGCAGGTATCATTGAGAGTCGCTCTCTGGGA
ATGAAGGGTACCTATCTCAAGGTGATCAACGAAGGTATCTTTGACAAGCTAAAGGAATTTTAA

Upstream 100 bases:

>100_bases
TCGAATTGTAGGTATAATAGCCAATTTTCTGATAATTCCTTGCAAAAGCTAGGGTCCTTTGATATAATTGTAACGCAAAT
AATTAAAAGGAAAAGAAAAA

Downstream 100 bases:

>100_bases
TAGCTCAGATGTCGGCAATCGTCTGCTAAGCCCAAGGCTTGCCTCTAGCTCTACTAGCTGTGATGAGTCAGAGCAAGTAG
AGAAAGCTCTGACACTATGT

Product: transcriptional repressor CodY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPNLLQKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGSLLGYAMKYKTNTDRVEEFFETRQFPDAYV
KAASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPIYGGGMRLGTLIIWRNDNEFSDDDLVLVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILSELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Sequences:

>Translated_260_residues
MPNLLQKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGSLLGYAMKYKTNTDRVEEFFETRQFPDAYV
KAASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPIYGGGMRLGTLIIWRNDNEFSDDDLVLVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILSELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF
>Mature_259_residues
PNLLQKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGSLLGYAMKYKTNTDRVEEFFETRQFPDAYVK
AASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPIYGGGMRLGTLIIWRNDNEFSDDDLVLVEISSTVVGIQLLNL
QTENLEETIRKQTAVNMAINTLSYSEMKAVAAILSELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLGM
KGTYLKVINEGIFDKLKEF

Specific function: DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of

COG id: COG4465

COG function: function code K; Pleiotropic transcriptional repressor

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CodY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014154
- InterPro:   IPR010312
- InterPro:   IPR013198
- InterPro:   IPR011991 [H]

Pfam domain/function: PF06018 CodY; PF08222 HTH_CodY [H]

EC number: NA

Molecular weight: Translated: 28805; Mature: 28674

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNLLQKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGSLLGYAMKYK
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCHHHHEEEEEC
TNTDRVEEFFETRQFPDAYVKAASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPI
CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCEEEEECCCCCCCCCCCHHHHHH
YGGGMRLGTLIIWRNDNEFSDDDLVLVEISSTVVGIQLLNLQTENLEETIRKQTAVNMAI
HCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
NTLSYSEMKAVAAILSELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
HHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCEECCCCC
MKGTYLKVINEGIFDKLKEF
CCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PNLLQKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGSLLGYAMKYK
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCHHHHEEEEEC
TNTDRVEEFFETRQFPDAYVKAASRVYDTEANLSVENELTIFPVESKDIYPDGLTTIAPI
CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCEEEEECCCCCCCCCCCHHHHHH
YGGGMRLGTLIIWRNDNEFSDDDLVLVEISSTVVGIQLLNLQTENLEETIRKQTAVNMAI
HCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
NTLSYSEMKAVAAILSELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
HHCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHCCCEECCCCC
MKGTYLKVINEGIFDKLKEF
CCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA