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The map label for this gene is 195953022

Identifier: 195953022

GI number: 195953022

Start: 581313

End: 581753

Strand: Direct

Name: 195953022

Synonym: HY04AAS1_0647

Alternate gene names: NA

Gene position: 581313-581753 (Clockwise)

Preceding gene: 195953021

Following gene: 195953023

Centisome position: 37.28

GC content: 34.47

Gene sequence:

>441_bases
ATGAGCGATTATTCTAAAAAGAGGGATTTTTCAAAAACACCAGAACCTCGATGGAGTGTAATAGAAAGCCACGAATCTAT
ATTTGTAATACAAGAACATCATGCTTCTCATCTACATTGGGATTTTAGGTTGGCTTTAGATGGTGTATTAAAATCTTGGG
CAATACCAAAAGAACCACCTATAGAAAGCGGTGTCAAAAGACTTGCCATACAAACAGAAGATCATCCTTTGGAATATGCG
AACTTTGAAGGTGTGATACCAGAAGGCCAGTATGGAGCTGGTGTAGTAAAAATTTGGGATAAAGGTACCTTTGAGCTTTT
AGAACGAACAGATAAAAAATACGATTTTATACTAAATGGCAACAAATTAAAAGGTAAGTATCATCTTATAAAATTTCCCA
AAGGTGGTGATAATGCTTGGTTGTTTTTTAAATCAGATTAA

Upstream 100 bases:

>100_bases
AAGGGCTTATAGAAGAGCTTAACATAGGACATTCTATAATATCAAATGCGGTGCTGTTTGGCTTGGAGAAAGCGATCACA
AAAATGCTTGGTATAATATC

Downstream 100 bases:

>100_bases
TATGTTGCTATATAAATAAAAATGATTTATTATAATAATTATGCCGATAGATAAATTGACAAAAGCTCAAAAAGCTGCGG
TACTTATGATGGCTTTACCT

Product: DNA ligase D, 3'-phosphoesterase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSDYSKKRDFSKTPEPRWSVIESHESIFVIQEHHASHLHWDFRLALDGVLKSWAIPKEPPIESGVKRLAIQTEDHPLEYA
NFEGVIPEGQYGAGVVKIWDKGTFELLERTDKKYDFILNGNKLKGKYHLIKFPKGGDNAWLFFKSD

Sequences:

>Translated_146_residues
MSDYSKKRDFSKTPEPRWSVIESHESIFVIQEHHASHLHWDFRLALDGVLKSWAIPKEPPIESGVKRLAIQTEDHPLEYA
NFEGVIPEGQYGAGVVKIWDKGTFELLERTDKKYDFILNGNKLKGKYHLIKFPKGGDNAWLFFKSD
>Mature_145_residues
SDYSKKRDFSKTPEPRWSVIESHESIFVIQEHHASHLHWDFRLALDGVLKSWAIPKEPPIESGVKRLAIQTEDHPLEYAN
FEGVIPEGQYGAGVVKIWDKGTFELLERTDKKYDFILNGNKLKGKYHLIKFPKGGDNAWLFFKSD

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 16914; Mature: 16783

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYSKKRDFSKTPEPRWSVIESHESIFVIQEHHASHLHWDFRLALDGVLKSWAIPKEPP
CCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCC
IESGVKRLAIQTEDHPLEYANFEGVIPEGQYGAGVVKIWDKGTFELLERTDKKYDFILNG
HHHHHHEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEEEEC
NKLKGKYHLIKFPKGGDNAWLFFKSD
CEECCEEEEEECCCCCCCEEEEEECC
>Mature Secondary Structure 
SDYSKKRDFSKTPEPRWSVIESHESIFVIQEHHASHLHWDFRLALDGVLKSWAIPKEPP
CCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCC
IESGVKRLAIQTEDHPLEYANFEGVIPEGQYGAGVVKIWDKGTFELLERTDKKYDFILNG
HHHHHHEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEEEEC
NKLKGKYHLIKFPKGGDNAWLFFKSD
CEECCEEEEEECCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]