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The map label for this gene is dcd

Identifier: 195952936

GI number: 195952936

Start: 498109

End: 498642

Strand: Direct

Name: dcd

Synonym: HY04AAS1_0561

Alternate gene names: 195952936

Gene position: 498109-498642 (Clockwise)

Preceding gene: 195952935

Following gene: 195952953

Centisome position: 31.94

GC content: 34.27

Gene sequence:

>534_bases
TTGATATTAAGCGATAAAACCATATTGGACTACATAAAGAGCTCAAAAATTATAGTAGAGCCTTTTGATGAATCTTCTTT
GCAATGCTCTTCTTTGGATCTAAGACTTAGTAATTCGATAGCTTTTTACGAAGAGCTAGATATAATAGATATTAAAAGCC
CTATACAGGCAAAAACTGTAACTTTCGAAGAATATTTTATTATAAACCCCGGCGAATTTTTATTGGCCTCCACCATGGAA
TATATAAAACTTCCAGAATTTATAACAGCTTTTGTAGAAGGAAGAAGCTCCTTGGGGCGTCTTGGGCTTTTCATAGAAAA
TGCTGGTTGGGTAGACGCTGGATTTGAAGGTCAAATTACGCTAGAGCTTTACAATGCTAACAAATATCCTATTAAGCTTT
ACAAAGGCATGAGGATATGTCAACTTGTTTTTGCTAAACTTGACGAAATACCAAGCAAAGTTTACAGAGGCAAATACTTA
TGTCAAAAAGGAGCTACACCTTCAAAGATTTTTATGGATTTTGATAAGAAGTAG

Upstream 100 bases:

>100_bases
TAGACCATCTAGATGAAGTGTTTAAAATTGTTTTTAAGGATAACATTGTAAAGCAGAAGCCTAAAAAAGGCTCCAAACCC
AAAAAAGCTAAGGAGAAGCC

Downstream 100 bases:

>100_bases
CGTATATGCTATTATGGTTTTGAAGCCATATGAGCGCATGGTATACTTTATAAGCGTAAGAAGGCCTTCCGTTGTAATGC
CATATGGCTTGCCAGCTAAG

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MILSDKTILDYIKSSKIIVEPFDESSLQCSSLDLRLSNSIAFYEELDIIDIKSPIQAKTVTFEEYFIINPGEFLLASTME
YIKLPEFITAFVEGRSSLGRLGLFIENAGWVDAGFEGQITLELYNANKYPIKLYKGMRICQLVFAKLDEIPSKVYRGKYL
CQKGATPSKIFMDFDKK

Sequences:

>Translated_177_residues
MILSDKTILDYIKSSKIIVEPFDESSLQCSSLDLRLSNSIAFYEELDIIDIKSPIQAKTVTFEEYFIINPGEFLLASTME
YIKLPEFITAFVEGRSSLGRLGLFIENAGWVDAGFEGQITLELYNANKYPIKLYKGMRICQLVFAKLDEIPSKVYRGKYL
CQKGATPSKIFMDFDKK
>Mature_177_residues
MILSDKTILDYIKSSKIIVEPFDESSLQCSSLDLRLSNSIAFYEELDIIDIKSPIQAKTVTFEEYFIINPGEFLLASTME
YIKLPEFITAFVEGRSSLGRLGLFIENAGWVDAGFEGQITLELYNANKYPIKLYKGMRICQLVFAKLDEIPSKVYRGKYL
CQKGATPSKIFMDFDKK

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

Organism=Escherichia coli, GI1788379, Length=193, Percent_Identity=30.5699481865285, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_HYDS0 (B4U7Y7)

Other databases:

- EMBL:   CP001130
- RefSeq:   YP_002121226.1
- ProteinModelPortal:   B4U7Y7
- SMR:   B4U7Y7
- GeneID:   6743357
- GenomeReviews:   CP001130_GR
- KEGG:   hya:HY04AAS1_0561
- HOGENOM:   HBG553199
- OMA:   SPFSHEN
- HAMAP:   MF_00146
- InterPro:   IPR011962
- InterPro:   IPR008180
- TIGRFAMs:   TIGR02274

Pfam domain/function: PF00692 dUTPase

EC number: =3.5.4.13

Molecular weight: Translated: 20187; Mature: 20187

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSDKTILDYIKSSKIIVEPFDESSLQCSSLDLRLSNSIAFYEELDIIDIKSPIQAKTV
CCCCCHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCEEEEECCCEEECCCCCCEEEE
TFEEYFIINPGEFLLASTMEYIKLPEFITAFVEGRSSLGRLGLFIENAGWVDAGFEGQIT
EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEE
LELYNANKYPIKLYKGMRICQLVFAKLDEIPSKVYRGKYLCQKGATPSKIFMDFDKK
EEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MILSDKTILDYIKSSKIIVEPFDESSLQCSSLDLRLSNSIAFYEELDIIDIKSPIQAKTV
CCCCCHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCEEEEECCCEEECCCCCCEEEE
TFEEYFIINPGEFLLASTMEYIKLPEFITAFVEGRSSLGRLGLFIENAGWVDAGFEGQIT
EEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEE
LELYNANKYPIKLYKGMRICQLVFAKLDEIPSKVYRGKYLCQKGATPSKIFMDFDKK
EEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA