Definition Hydrogenobaculum sp. Y04AAS1 chromosome, complete genome.
Accession NC_011126
Length 1,559,514

Click here to switch to the map view.

The map label for this gene is 195952872

Identifier: 195952872

GI number: 195952872

Start: 437858

End: 438424

Strand: Direct

Name: 195952872

Synonym: HY04AAS1_0497

Alternate gene names: NA

Gene position: 437858-438424 (Clockwise)

Preceding gene: 195952871

Following gene: 195952879

Centisome position: 28.08

GC content: 31.57

Gene sequence:

>567_bases
ATGAGTACTATGACTAAAGAGATAGATATTTCCTCTGCTAAAAAGCTTGGTATAATGGGCAGTTTGTTTCTTTGTCTTTT
TTTTATACCTTTTTTGGGTGTGTTTGCTTTTTTTGCTGGGATGTCTTTGATTTTGATGGCTTTCAATAGATTTAGTAAGG
TCTTTGACAACGATAAGTTATTTAGTAAATTCTTACAAGCTTTTGTGCCGAGTATAATACTTGGTTTTGCGGTGCTCATC
TTTGAGCTTATGTTTGGTTTTGGATTTGTTTTATCAAAAGTTTATAAAACAGGTTTTAACGAAGGGGCGTTTTTCTTTTT
GGTTAGTCTTATGATTTTTGTAGGGGTTTATCTGGTTGGCATGTTTATATCTTACAATTATAAAAAGGCTTTTCATGAGC
TTTCAAAAGCCACAAACCACAAGCTTTTTGAAACTGTTGGAAAGTTGATGTTTTTTGGTTCTACGCTGGTAATATTCTTT
GTGGGTATACTTATAGTCTATATCTCTTATATATTGCTTTTGATAGCTTTTATAAAACTACCAAACAAACTCAATCATCT
TTTGTAA

Upstream 100 bases:

>100_bases
AGGCTTTTAAAGATTTTTATTTGGTTAAGATGCCAAGGCTTTCTGTGATGGAAGTGCCTGAGCATCTTGTAAAAGTTATT
GAAAATTTAGAGCAATCGTT

Downstream 100 bases:

>100_bases
GGAAACTCTAGTTCTAATTCTATTTCTTTTACTTGTCTTTCATACTCTCTTAGTAAGAGTTTGCCAGTTCTTGATAAATC
GTAGTATGTATGGTTTCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSTMTKEIDISSAKKLGIMGSLFLCLFFIPFLGVFAFFAGMSLILMAFNRFSKVFDNDKLFSKFLQAFVPSIILGFAVLI
FELMFGFGFVLSKVYKTGFNEGAFFFLVSLMIFVGVYLVGMFISYNYKKAFHELSKATNHKLFETVGKLMFFGSTLVIFF
VGILIVYISYILLLIAFIKLPNKLNHLL

Sequences:

>Translated_188_residues
MSTMTKEIDISSAKKLGIMGSLFLCLFFIPFLGVFAFFAGMSLILMAFNRFSKVFDNDKLFSKFLQAFVPSIILGFAVLI
FELMFGFGFVLSKVYKTGFNEGAFFFLVSLMIFVGVYLVGMFISYNYKKAFHELSKATNHKLFETVGKLMFFGSTLVIFF
VGILIVYISYILLLIAFIKLPNKLNHLL
>Mature_187_residues
STMTKEIDISSAKKLGIMGSLFLCLFFIPFLGVFAFFAGMSLILMAFNRFSKVFDNDKLFSKFLQAFVPSIILGFAVLIF
ELMFGFGFVLSKVYKTGFNEGAFFFLVSLMIFVGVYLVGMFISYNYKKAFHELSKATNHKLFETVGKLMFFGSTLVIFFV
GILIVYISYILLLIAFIKLPNKLNHLL

Specific function: Unknown

COG id: COG2245

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21358; Mature: 21227

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTMTKEIDISSAKKLGIMGSLFLCLFFIPFLGVFAFFAGMSLILMAFNRFSKVFDNDKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FSKFLQAFVPSIILGFAVLIFELMFGFGFVLSKVYKTGFNEGAFFFLVSLMIFVGVYLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
MFISYNYKKAFHELSKATNHKLFETVGKLMFFGSTLVIFFVGILIVYISYILLLIAFIKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PNKLNHLL
CHHHHHCC
>Mature Secondary Structure 
STMTKEIDISSAKKLGIMGSLFLCLFFIPFLGVFAFFAGMSLILMAFNRFSKVFDNDKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
FSKFLQAFVPSIILGFAVLIFELMFGFGFVLSKVYKTGFNEGAFFFLVSLMIFVGVYLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
MFISYNYKKAFHELSKATNHKLFETVGKLMFFGSTLVIFFVGILIVYISYILLLIAFIKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PNKLNHLL
CHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA