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The map label for this gene is cydB [H]

Identifier: 195952846

GI number: 195952846

Start: 408722

End: 409762

Strand: Direct

Name: cydB [H]

Synonym: HY04AAS1_0468

Alternate gene names: 195952846

Gene position: 408722-409762 (Clockwise)

Preceding gene: 195952845

Following gene: 195952851

Centisome position: 26.21

GC content: 36.31

Gene sequence:

>1041_bases
ATGGGTATATTACCAGATGGACTTTTTACCTTACAAGGTTTGTGGTTTTTGATAGCAGGTGTATTTTTAATTGGCTACTC
AATAACTGATGGATTTGATTTGGGTAGTGCTTTTCCTATGATATTTATGAAAAAAGAATATGACAGAATAGCTCTTTATA
ATTCTGTAGCGCCAGTATGGGATGGAAACGAAGTTTGGCTTATAGCTGGTGGCGGCTTACTGTTTGCTGCTTTTCCTACA
GTTTACGCTGCTTCGTTTTCTGGCTTTTATTTAGCGATACTTCTTGTCTTATGGGCTCTTATAGGAAGGGCTGTGGCTTT
TGAATACCGCAACAAAAGAGAATCCATGGCTTGGAGGCATACATTTGATTTTATATACTGGCTTGGCAATGTTTTACCTG
CTATTCTTTTTGGAGTTGCCGTAGGGAATGCTGTAGTAGGCGTACCTATAGATCAAGACGCTGTATACCATGGTACATTT
TTCACGCTTTTAAGACCAGTACCTCTTGCAATGGGATTGGTAAGCTTTTTCATGTTTGCTATGCATGGAGCTGCATACTT
GTTGCTTAAAACCGAAGGTTCTGTTTTCGAGATGGCTAAAAAGTACGCTAGCATAAGTGTTATAGGATATGTAATATCTG
TAATATTAACAAACGCATTGGCAATGCAAGAAGCCCCATTTTTGTATAAAAACTATTTTACTTATCCAATACTTTTTGCA
ATACCTTTGATGATGTTTGTAGGTGTTGTACTCTATGTAAGCTTACTAAAATCTGGTAAATACGAAAAAATGGTTTATGC
ATCTGGGCTTGTTAATGCTTTCACTGTTTTAAATGTAGCTTGTGCTTCTTTCCCAGTTTTGATGCGCTCAAGTATAAATC
CAGATTACAGTCTAACAGTGTTTAACGCTTCTTCTTCTACCCTCACTCTAACAGTGATGCTTATTGTAACGGTTATATTT
ATGCCTATAGTTATATATTATACTAGGTATGCGTATAAGGTATTTAGTGGAAAAGTAAGTGGAGAAAAGAGTTATTATTA
A

Upstream 100 bases:

>100_bases
CCTTCTACAGCTCCAGCTATGGGCTCGACGAGTACAGCTTTGCAAGCTTCTAAGACAGATTTGAACAACGATAACAGGAT
TTCTTAAGGAGGTGAATACT

Downstream 100 bases:

>100_bases
TTTTCTTGAAGCGTCTTGATGCAACCATTCCTATCCTTCTTTTACCCCTCTTTTGAGGGGGCTTTCTAAATATATAGTTA
ACTTATCATTAGAAATAATT

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MGILPDGLFTLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFMKKEYDRIALYNSVAPVWDGNEVWLIAGGGLLFAAFPT
VYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWLGNVLPAILFGVAVGNAVVGVPIDQDAVYHGTF
FTLLRPVPLAMGLVSFFMFAMHGAAYLLLKTEGSVFEMAKKYASISVIGYVISVILTNALAMQEAPFLYKNYFTYPILFA
IPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLNVACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIF
MPIVIYYTRYAYKVFSGKVSGEKSYY

Sequences:

>Translated_346_residues
MGILPDGLFTLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFMKKEYDRIALYNSVAPVWDGNEVWLIAGGGLLFAAFPT
VYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWLGNVLPAILFGVAVGNAVVGVPIDQDAVYHGTF
FTLLRPVPLAMGLVSFFMFAMHGAAYLLLKTEGSVFEMAKKYASISVIGYVISVILTNALAMQEAPFLYKNYFTYPILFA
IPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLNVACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIF
MPIVIYYTRYAYKVFSGKVSGEKSYY
>Mature_345_residues
GILPDGLFTLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFMKKEYDRIALYNSVAPVWDGNEVWLIAGGGLLFAAFPTV
YAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWLGNVLPAILFGVAVGNAVVGVPIDQDAVYHGTFF
TLLRPVPLAMGLVSFFMFAMHGAAYLLLKTEGSVFEMAKKYASISVIGYVISVILTNALAMQEAPFLYKNYFTYPILFAI
PLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLNVACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIFM
PIVIYYTRYAYKVFSGKVSGEKSYY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=37.6021798365123, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1787213, Length=364, Percent_Identity=35.989010989011, Blast_Score=205, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38391; Mature: 38260

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGILPDGLFTLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFMKKEYDRIALYNSVAPVW
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCHHHHHHCCCCCC
DGNEVWLIAGGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRH
CCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFDFIYWLGNVLPAILFGVAVGNAVVGVPIDQDAVYHGTFFTLLRPVPLAMGLVSFFMFA
HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MHGAAYLLLKTEGSVFEMAKKYASISVIGYVISVILTNALAMQEAPFLYKNYFTYPILFA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLNVACASFPVLMRSSINPDYSLTV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
FNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFSGKVSGEKSYY
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GILPDGLFTLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFMKKEYDRIALYNSVAPVW
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEECCCCHHHHHHCCCCCC
DGNEVWLIAGGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRH
CCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFDFIYWLGNVLPAILFGVAVGNAVVGVPIDQDAVYHGTFFTLLRPVPLAMGLVSFFMFA
HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MHGAAYLLLKTEGSVFEMAKKYASISVIGYVISVILTNALAMQEAPFLYKNYFTYPILFA
HCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
IPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLNVACASFPVLMRSSINPDYSLTV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
FNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFSGKVSGEKSYY
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]