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The map label for this gene is cydA [H]

Identifier: 195952845

GI number: 195952845

Start: 407164

End: 408708

Strand: Direct

Name: cydA [H]

Synonym: HY04AAS1_0467

Alternate gene names: 195952845

Gene position: 407164-408708 (Clockwise)

Preceding gene: 195952844

Following gene: 195952846

Centisome position: 26.11

GC content: 37.99

Gene sequence:

>1545_bases
ATGGACTTGCTTGACTTGTCCAGGTTTCAGTTTGCCTTTACGGCGATCGTCCACTTTATTTTTGTGCCTCTTACGTTGGG
GCTCTCTGTGTTCATAGCCATAGTAAAGACTATAGCTTACAAAACCAAAGATCCTAAGTATGACAAATTGGCTATGTTTT
TGATGAAGCTTTTTGCAGTAAACTTTGCTGCTGGTGTGGCTACAGGTCTTACTATGGAGTTTGAGTTTGGTACAAATTGG
TTTACCTATTCAAAGTTTGTAGGTGACATCTTTGGAGCACCGCTTGCCATTGAAGGTCTTATGGCTTTCTTCTTAGAGTC
AACTTTTATAGGTGTATTCTTATTTGGAAAAGATAGAATATCTGATGGTATGCACACGTTTTCCGCTTGGATGGTAGCTC
TTGGTAGCAACCTATCCGCTCTTTGGATTTTAATAGCAAATTCGTGGATGCAAACCCCTGCTGGATACAAAATAGTCCAA
ACTCCACAAGGTATAAGAGCCGAGCTTACAAACTTTTGGGAAGCTGTTATAAACCATACTACTGTCATAAGGCTTTTGCA
TACTGTAACAGCAGGTCAAATTACCGCTGGTTTTTTTGTAATGGGTGTAATGGCTTATTTCTTATTAAGAAACAAAAATA
TCGACATGGCCAAAGCTGGTTTAAAAGTAGCTCTTATTTTTACTGTCATAGTATCCGTATCTGAAATTATAATAGGGGAC
ACGGCTGGACACTTAGTGGCAGAATATCAACCCCTTAAACTTGCTATGATGGAAGGTAAATGGAACACCGAGCAACCAGC
TTCTTTAGATGTTTTTGGTTATGTAGACCAAAGTGCCCAAAAGACTTATCCTTTTATACAAATCCCTGGTTTGTTATCTT
TCTTGTCTTATCATAACTTTGATGCCAAAGTATACGGTATAAACGATTTGATAACTATGTACGATCAAAAAGCCCAAAAC
TATGCAAACGAAGAAAAAACATTAGAAGCCCAATACGCTTCTAATCCAAACCCAGCTTTGAAAGACAAGATAGTGGCCGA
TAAAGCTTATGCCAAAGCTTACAACATTTCTTTAAAAGATCTACCACCTATAAATCTTGTCTTCATGCCATTTCATATAA
TGGTTGGTCTTGGATTTTTCTTTGCATTTGTAACTTTGTGGGGTCTATATCTCTATAAAAAAGGTACTCTTTATACCAAC
AAAGCTTTCTTAAAGACCGTTTTATATTCAATTCCCCTTCCATTTATAGCTTCTGAGCTTGGCTGGATGACCGCTGAAAT
AGGTCGTCAACCTTGGATAGTTACTGGCGTGCTTAAAACTGCCGATGCTGTATCTTTTAATTCTACTTCAAATGTAATGT
TCTCTGTGCTTACTTTCGTGACAATATACATACTACTATTCTACGTATATGTAACCACTATGATAAAGAAAGTAAAAGAG
TACGAAGACACCGAGGCTCCTTCTACAGCTCCAGCTATGGGCTCGACGAGTACAGCTTTGCAAGCTTCTAAGACAGATTT
GAACAACGATAACAGGATTTCTTAA

Upstream 100 bases:

>100_bases
TTTAAACGGCAATATCCTTGAGATAGGTACTCCTGGTTTTGTTAAGAAGTTCTGGGATCCTTATACTTGATTAATAATCT
TTTAAAAGGAGGTATAGATT

Downstream 100 bases:

>100_bases
GGAGGTGAATACTATGGGTATATTACCAGATGGACTTTTTACCTTACAAGGTTTGTGGTTTTTGATAGCAGGTGTATTTT
TAATTGGCTACTCAATAACT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MDLLDLSRFQFAFTAIVHFIFVPLTLGLSVFIAIVKTIAYKTKDPKYDKLAMFLMKLFAVNFAAGVATGLTMEFEFGTNW
FTYSKFVGDIFGAPLAIEGLMAFFLESTFIGVFLFGKDRISDGMHTFSAWMVALGSNLSALWILIANSWMQTPAGYKIVQ
TPQGIRAELTNFWEAVINHTTVIRLLHTVTAGQITAGFFVMGVMAYFLLRNKNIDMAKAGLKVALIFTVIVSVSEIIIGD
TAGHLVAEYQPLKLAMMEGKWNTEQPASLDVFGYVDQSAQKTYPFIQIPGLLSFLSYHNFDAKVYGINDLITMYDQKAQN
YANEEKTLEAQYASNPNPALKDKIVADKAYAKAYNISLKDLPPINLVFMPFHIMVGLGFFFAFVTLWGLYLYKKGTLYTN
KAFLKTVLYSIPLPFIASELGWMTAEIGRQPWIVTGVLKTADAVSFNSTSNVMFSVLTFVTIYILLFYVYVTTMIKKVKE
YEDTEAPSTAPAMGSTSTALQASKTDLNNDNRIS

Sequences:

>Translated_514_residues
MDLLDLSRFQFAFTAIVHFIFVPLTLGLSVFIAIVKTIAYKTKDPKYDKLAMFLMKLFAVNFAAGVATGLTMEFEFGTNW
FTYSKFVGDIFGAPLAIEGLMAFFLESTFIGVFLFGKDRISDGMHTFSAWMVALGSNLSALWILIANSWMQTPAGYKIVQ
TPQGIRAELTNFWEAVINHTTVIRLLHTVTAGQITAGFFVMGVMAYFLLRNKNIDMAKAGLKVALIFTVIVSVSEIIIGD
TAGHLVAEYQPLKLAMMEGKWNTEQPASLDVFGYVDQSAQKTYPFIQIPGLLSFLSYHNFDAKVYGINDLITMYDQKAQN
YANEEKTLEAQYASNPNPALKDKIVADKAYAKAYNISLKDLPPINLVFMPFHIMVGLGFFFAFVTLWGLYLYKKGTLYTN
KAFLKTVLYSIPLPFIASELGWMTAEIGRQPWIVTGVLKTADAVSFNSTSNVMFSVLTFVTIYILLFYVYVTTMIKKVKE
YEDTEAPSTAPAMGSTSTALQASKTDLNNDNRIS
>Mature_514_residues
MDLLDLSRFQFAFTAIVHFIFVPLTLGLSVFIAIVKTIAYKTKDPKYDKLAMFLMKLFAVNFAAGVATGLTMEFEFGTNW
FTYSKFVGDIFGAPLAIEGLMAFFLESTFIGVFLFGKDRISDGMHTFSAWMVALGSNLSALWILIANSWMQTPAGYKIVQ
TPQGIRAELTNFWEAVINHTTVIRLLHTVTAGQITAGFFVMGVMAYFLLRNKNIDMAKAGLKVALIFTVIVSVSEIIIGD
TAGHLVAEYQPLKLAMMEGKWNTEQPASLDVFGYVDQSAQKTYPFIQIPGLLSFLSYHNFDAKVYGINDLITMYDQKAQN
YANEEKTLEAQYASNPNPALKDKIVADKAYAKAYNISLKDLPPINLVFMPFHIMVGLGFFFAFVTLWGLYLYKKGTLYTN
KAFLKTVLYSIPLPFIASELGWMTAEIGRQPWIVTGVLKTADAVSFNSTSNVMFSVLTFVTIYILLFYVYVTTMIKKVKE
YEDTEAPSTAPAMGSTSTALQASKTDLNNDNRIS

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=496, Percent_Identity=38.3064516129032, Blast_Score=359, Evalue=1e-100,
Organism=Escherichia coli, GI1787212, Length=499, Percent_Identity=39.8797595190381, Blast_Score=347, Evalue=9e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57336; Mature: 57336

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLDLSRFQFAFTAIVHFIFVPLTLGLSVFIAIVKTIAYKTKDPKYDKLAMFLMKLFAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NFAAGVATGLTMEFEFGTNWFTYSKFVGDIFGAPLAIEGLMAFFLESTFIGVFLFGKDRI
HHHHHHHHCEEEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCHHH
SDGMHTFSAWMVALGSNLSALWILIANSWMQTPAGYKIVQTPQGIRAELTNFWEAVINHT
CCHHHHHHHHHHHHCCCCCEEHHEEHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
TVIRLLHTVTAGQITAGFFVMGVMAYFLLRNKNIDMAKAGLKVALIFTVIVSVSEIIIGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TAGHLVAEYQPLKLAMMEGKWNTEQPASLDVFGYVDQSAQKTYPFIQIPGLLSFLSYHNF
CCCHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCCEEECHHHHHHHHHCCC
DAKVYGINDLITMYDQKAQNYANEEKTLEAQYASNPNPALKDKIVADKAYAKAYNISLKD
CEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCC
LPPINLVFMPFHIMVGLGFFFAFVTLWGLYLYKKGTLYTNKAFLKTVLYSIPLPFIASEL
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCHHHHHHHH
GWMTAEIGRQPWIVTGVLKTADAVSFNSTSNVMFSVLTFVTIYILLFYVYVTTMIKKVKE
HHHHHHHCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEDTEAPSTAPAMGSTSTALQASKTDLNNDNRIS
HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDLLDLSRFQFAFTAIVHFIFVPLTLGLSVFIAIVKTIAYKTKDPKYDKLAMFLMKLFAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NFAAGVATGLTMEFEFGTNWFTYSKFVGDIFGAPLAIEGLMAFFLESTFIGVFLFGKDRI
HHHHHHHHCEEEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCHHH
SDGMHTFSAWMVALGSNLSALWILIANSWMQTPAGYKIVQTPQGIRAELTNFWEAVINHT
CCHHHHHHHHHHHHCCCCCEEHHEEHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
TVIRLLHTVTAGQITAGFFVMGVMAYFLLRNKNIDMAKAGLKVALIFTVIVSVSEIIIGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TAGHLVAEYQPLKLAMMEGKWNTEQPASLDVFGYVDQSAQKTYPFIQIPGLLSFLSYHNF
CCCHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHCCCCEEECHHHHHHHHHCCC
DAKVYGINDLITMYDQKAQNYANEEKTLEAQYASNPNPALKDKIVADKAYAKAYNISLKD
CEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCC
LPPINLVFMPFHIMVGLGFFFAFVTLWGLYLYKKGTLYTNKAFLKTVLYSIPLPFIASEL
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCHHHHHHHH
GWMTAEIGRQPWIVTGVLKTADAVSFNSTSNVMFSVLTFVTIYILLFYVYVTTMIKKVKE
HHHHHHHCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YEDTEAPSTAPAMGSTSTALQASKTDLNNDNRIS
HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]