Click here to switch to the map view.

The map label for this gene is rpmB

Identifier: 195952451

GI number: 195952451

Start: 65293

End: 65484

Strand: Direct

Name: rpmB

Synonym: HY04AAS1_0071

Alternate gene names: 195952451

Gene position: 65293-65484 (Clockwise)

Preceding gene: 195952450

Following gene: 195952452

Centisome position: 4.19

GC content: 40.1

Gene sequence:

>192_bases
ATGGCGGCATGTTTTGTTTGCAATAAAAAGGCTGTTTATGGGAAAAGCGTTACATTTTCAGCAGAAAGAAATTCAAGAGT
ATTTAAACCAAACCTCCAGAGTGTAAAGATTAGGATGCCAGATGGTAGCACAAAGCGCGTTATGGTATGTACAAAGTGTC
TAAAAGCCGGGAAGGTGGTAAAAGCCGTTTGA

Upstream 100 bases:

>100_bases
TATTATAAAGCCTTATTGCTATCAATATTTAAAAGAGATTTCTTGAGCTTTAGTTTTATGCTATAATATTAGCTTAAAAC
ATTTGTAAAGGAGTTATGAT

Downstream 100 bases:

>100_bases
TATACTGATTTAACGCATTTTGAAAAGATAAAATAAATATATATTTTTCTTATGAAAGTTTTAGTGGCAGGGGGTACCGG
TTTTGTTGGCAAATATGTTG

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 63; Mature: 62

Protein sequence:

>63_residues
MAACFVCNKKAVYGKSVTFSAERNSRVFKPNLQSVKIRMPDGSTKRVMVCTKCLKAGKVVKAV

Sequences:

>Translated_63_residues
MAACFVCNKKAVYGKSVTFSAERNSRVFKPNLQSVKIRMPDGSTKRVMVCTKCLKAGKVVKAV
>Mature_62_residues
AACFVCNKKAVYGKSVTFSAERNSRVFKPNLQSVKIRMPDGSTKRVMVCTKCLKAGKVVKAV

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_HYDS0 (B4U6J5)

Other databases:

- EMBL:   CP001130
- RefSeq:   YP_002120741.1
- ProteinModelPortal:   B4U6J5
- SMR:   B4U6J5
- GeneID:   6742854
- GenomeReviews:   CP001130_GR
- KEGG:   hya:HY04AAS1_0071
- HOGENOM:   HBG597003
- OMA:   ISHSHRV
- ProtClustDB:   CLSK2803289
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 6911; Mature: 6780

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
11.1 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAACFVCNKKAVYGKSVTFSAERNSRVFKPNLQSVKIRMPDGSTKRVMVCTKCLKAGKVV
CCEEEEECCCCCCCCEEEEECCCCCEEECCCCCEEEEECCCCCCCEEHEEHHHHHCCCEE
KAV
ECC
>Mature Secondary Structure 
AACFVCNKKAVYGKSVTFSAERNSRVFKPNLQSVKIRMPDGSTKRVMVCTKCLKAGKVV
CEEEEECCCCCCCCEEEEECCCCCEEECCCCCEEEEECCCCCCCEEHEEHHHHHCCCEE
KAV
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA