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The map label for this gene is dapB [H]

Identifier: 195952449

GI number: 195952449

Start: 63929

End: 64717

Strand: Direct

Name: dapB [H]

Synonym: HY04AAS1_0069

Alternate gene names: 195952449

Gene position: 63929-64717 (Clockwise)

Preceding gene: 195952448

Following gene: 195952450

Centisome position: 4.1

GC content: 37.26

Gene sequence:

>789_bases
ATGACAAAAGATTCTCCTTATTTTGTTTCTATTGCCTTATGCGGCTTTTTGGGTCGCATGGGTAGTAGTATTATAGAAGT
TTCTAAAAGCTATCAAGACTTAGTTGTAAAAGCAGGCGTAGACAAAGAAGAGCTTATTAAAGGTAAAACTTTTGTGTTAG
AATATGTATCATCTAAATTAGAAGATGTTGTTGACTATGTAGATGTCGTCATAGAGTTTACAGGTAGTGTGGATACAGCC
ATAAAAAATGCTTATATATGCAAAGAACATAACAAACCTATTGTAATAGGCACTACTGGGTTTGATCAGCATCAGTTAGA
CCAAATAAAAGAACTCTCTAAATCAATACCTATAGTATTTTCCCCAAATATGAGTCTTGGGGTCAATGTACTCTTTAAGC
TTTTAGAAATAGCTACAAAAGCTTTAAAGGATAAAGGGTATGATATAGAGATATCAGAAATTCACCATCGTTTTAAAAAG
GATGCACCCTCTGGAACCGCTTTAAGGCTGTTGGAAATAGTAAAAAAAGAGATTCCGGATGTAAAAGAAACCTTTGGAAG
AGAATGGCTAGCACCAAGACAGGATAAGGAAGTGGGTGTTTTTGCTATAAGGGGAGGAGATGTGGTGGGTGAACATACTG
TCTATATGTTTGGTATGGGAGAGAGGTTGGAGCTTACCCATAGAGCCACAGATAGGAGGATATTCGCAAAGGGCTCTTTG
GAGGCTGCCAAATGGGTTTATAGAAAACCTGCGGGCTTTTATTCAATGTTTGATGTGCTTGGCTTATGA

Upstream 100 bases:

>100_bases
CTGGAGTTAACGTAGCCCTATATCCTGGAATAGTGCCACCAGATCAAGCTGTAGAAGCGGTAAATGAGCTTGAAGATCTC
ATTATGGGCGAAGGAGAAGA

Downstream 100 bases:

>100_bases
AGCTGTATAGTCTTTTATTGGATAAGACTTATAAGCCTTTGACACTCCTTGATTATAGAAAATCTTTCTTGTTAGAATAT
ACACAAAGGGCTACGGTGCT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTKDSPYFVSIALCGFLGRMGSSIIEVSKSYQDLVVKAGVDKEELIKGKTFVLEYVSSKLEDVVDYVDVVIEFTGSVDTA
IKNAYICKEHNKPIVIGTTGFDQHQLDQIKELSKSIPIVFSPNMSLGVNVLFKLLEIATKALKDKGYDIEISEIHHRFKK
DAPSGTALRLLEIVKKEIPDVKETFGREWLAPRQDKEVGVFAIRGGDVVGEHTVYMFGMGERLELTHRATDRRIFAKGSL
EAAKWVYRKPAGFYSMFDVLGL

Sequences:

>Translated_262_residues
MTKDSPYFVSIALCGFLGRMGSSIIEVSKSYQDLVVKAGVDKEELIKGKTFVLEYVSSKLEDVVDYVDVVIEFTGSVDTA
IKNAYICKEHNKPIVIGTTGFDQHQLDQIKELSKSIPIVFSPNMSLGVNVLFKLLEIATKALKDKGYDIEISEIHHRFKK
DAPSGTALRLLEIVKKEIPDVKETFGREWLAPRQDKEVGVFAIRGGDVVGEHTVYMFGMGERLELTHRATDRRIFAKGSL
EAAKWVYRKPAGFYSMFDVLGL
>Mature_261_residues
TKDSPYFVSIALCGFLGRMGSSIIEVSKSYQDLVVKAGVDKEELIKGKTFVLEYVSSKLEDVVDYVDVVIEFTGSVDTAI
KNAYICKEHNKPIVIGTTGFDQHQLDQIKELSKSIPIVFSPNMSLGVNVLFKLLEIATKALKDKGYDIEISEIHHRFKKD
APSGTALRLLEIVKKEIPDVKETFGREWLAPRQDKEVGVFAIRGGDVVGEHTVYMFGMGERLELTHRATDRRIFAKGSLE
AAKWVYRKPAGFYSMFDVLGL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=269, Percent_Identity=40.1486988847584, Blast_Score=164, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29359; Mature: 29228

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKDSPYFVSIALCGFLGRMGSSIIEVSKSYQDLVVKAGVDKEELIKGKTFVLEYVSSKL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
EDVVDYVDVVIEFTGSVDTAIKNAYICKEHNKPIVIGTTGFDQHQLDQIKELSKSIPIVF
HHHHHHHHHHHHHCCCHHHHHHHCEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE
SPNMSLGVNVLFKLLEIATKALKDKGYDIEISEIHHRFKKDAPSGTALRLLEIVKKEIPD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCH
VKETFGREWLAPRQDKEVGVFAIRGGDVVGEHTVYMFGMGERLELTHRATDRRIFAKGSL
HHHHHCHHCCCCCCCCCCEEEEEECCCEECCCEEEEEECCCCEEHHHHCCCCEEEECCCH
EAAKWVYRKPAGFYSMFDVLGL
HHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
TKDSPYFVSIALCGFLGRMGSSIIEVSKSYQDLVVKAGVDKEELIKGKTFVLEYVSSKL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
EDVVDYVDVVIEFTGSVDTAIKNAYICKEHNKPIVIGTTGFDQHQLDQIKELSKSIPIVF
HHHHHHHHHHHHHCCCHHHHHHHCEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE
SPNMSLGVNVLFKLLEIATKALKDKGYDIEISEIHHRFKKDAPSGTALRLLEIVKKEIPD
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCH
VKETFGREWLAPRQDKEVGVFAIRGGDVVGEHTVYMFGMGERLELTHRATDRRIFAKGSL
HHHHHCHHCCCCCCCCCCEEEEEECCCEECCCEEEEEECCCCEEHHHHCCCCEEEECCCH
EAAKWVYRKPAGFYSMFDVLGL
HHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]