| Definition | Hydrogenobaculum sp. Y04AAS1 chromosome, complete genome. |
|---|---|
| Accession | NC_011126 |
| Length | 1,559,514 |
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The map label for this gene is mcp3 [H]
Identifier: 195952435
GI number: 195952435
Start: 49700
End: 51844
Strand: Direct
Name: mcp3 [H]
Synonym: HY04AAS1_0055
Alternate gene names: 195952435
Gene position: 49700-51844 (Clockwise)
Preceding gene: 195952411
Following gene: 195952436
Centisome position: 3.19
GC content: 33.24
Gene sequence:
>2145_bases ATGACAAATATATCAGTGAAGACAAAGCTTTATATCTTGGGTGCAATAGTGGCTTTTTTTGGTGTTGTTATAGGGGCTAT CGTCTTTTATAATACCCATAAAGCAGTAGCTCAAATGGACCAAGAAAAGTATTGTCTTAAAGTAGCCGATCCTCTTTATG AGATGCTTATAGAACTTCAAACGGCTAGGATGTATAATAAGTCTTTGGCGGTGGGTGATAAAAGCTATAAAACACCTTTG GAAAATACTTTTAACAAAATAGACAAGATTTTATCAAAACTTTCTTTATTGGATAAAAAATATGGGAAAAAACTTGATAT GAACAAAAGTTTTGCTGAGCTTTTATCTATGTATGACAACCTTAAGCAAAATGCTTATAGTTTTAATCCGTATCAAGTGA ATAAAAATTATGATACCATATCTAACTTTTTAACAGATAAACTTATTATAAGAGATTGTTATATAAGAGGAAAACTTATC AAAGATCCTGATTTTGCGGATTCTACTGCCATAACTGGATTTTTTGGAAATCAGCCTCATATTATTTTAAAAGTCGGTAA ACTTCAAAGTAAATCTTTTGAGCTTATAAATATATCTAAACAAAACGCAACTTCAAACACTGCTCAAAGTACAAATTCAA CATCAAACCTAAACAATAGCTTAAACCAACAGAGCGCTTCTAATCAACAAAACACATATATACACCATTTGGTTATGGAT ATCTCAAGTTTGTTGAGCAGCATAAGAGAACATATTCATTACGCTTGTTTATTTTACAACGAGAGCGCCAGAGCCAATAA GTTTTACAACGAAATACATCTGTCTGCCAACGCTTATAAAAGATATATAAACGATACTTTTAAACCCATTATAGAAAAAA TATTGGATAATCCAGAGAGTGCCTATATTTACAAAGAGCAGTTTGTGAGCTCTCTTTCAAAGCTACAAACTCTTTCTAAC GCATTATCAAGAGATACAATTCATACGTTAGAAAAATCTGTAAATATTAGAGATGCAAAAGACCATGAAGTACTTTATGT AAGTCTATTTGTGGTAAGTATAGGCATAGTATTATCTATGTGGTTTGTATATTTGACGATAAAGAGTATAGATAACAACG TAAGTATATTAAATAGAGTTGCAAATGAATTTAAAAACGGTAATCTAAATATAAAAGCTGAGATACGTTATCAAGATGAA ATAGGTAAGGCAATAGAAAGTTTGGTAGATGGAGTTGGTACGGCAAACAGCATATTGCAAGATATAAAATCTACTATCGA GAGAATGGGAAGCTTAGATTTTACTAAAAATGTAGAGACTGATGCGGTAGGAGATTTTGAAGCTATCAAAAATGATGTCA ACAAGTCTTTGGACGCTTTGAGAAAACTATTGCAAGCTATAACAGAAAGCGTTGTAAAACTAGGTACAAGCATGGAAGAA ACATCTGCCACTACAAACGCTTTGGCTTTAGACAATAAAAATCTCAACGAGCAGATAAATGCGTTGGCAAATTCTATAGA AGAGATATCTGCTACTGTTAACTCTATAGCCTCAAACATGACAGATACAAAAAATATCATAAACAAACTTTTTGAAATAG TAAACAAAGGAAAATTGGCGATAAATCAAACAAGAGTTGATGCTGATATGATGAGTGAGCTGGCAAAAAAGGCAGTCTCC ATTGTAGATTCTATAGTGTTTATAACAGAACAGACAAATCTTTTAGCTTTAAACGCTGCCATAGAAGCGGCCCGTGCAGG GGAAGCTGGGAGAGGATTCGCCGTTGTGGCAGATGAGGTGAAGAAACTGGCTGAAAAAGCCGGTGGTTTTGCAAAGAACG TATCAGATATTATATCTGATATAACAAAAGGTGTAAATTCAACTGTTAAGTCTATATTGATGGTAGACGATTATTATAAA GATATAGAAAATTATACATCTAACGTACAAGAAGCTTCTCAATCCATATCTTCTGCCATAGAAGAGCAAAACGCTACTTT GAACATGCTAAACAACTCCATGTTAGATGTGAGGACGTTTTCTGACAAATTGGCGGCAGCTATAGAAGAGCTTTCAGCTA CAGCAAAGTCATTGGCTGATGTAGCTCAAGAGCTTAAAATAGAAGTTACTAAATTTAAGTTTTAG
Upstream 100 bases:
>100_bases TAAGTGTATTATAAATATTTTTATATTTCAATTCTGCTGCATTTCATACAAAAAAAAACGATTTATAATAGCAGGAAATT TTATATAAGTGGAGGTTAAT
Downstream 100 bases:
>100_bases GATTTTGGTATGAAAAAGGTTATTTTTGCTTTGGCTTTTTGTTTTATGGCATCTAACTCTTACGGTGTTTTATTAAAAGC TTCAAACGATAAATTTGCAG
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 714; Mature: 713
Protein sequence:
>714_residues MTNISVKTKLYILGAIVAFFGVVIGAIVFYNTHKAVAQMDQEKYCLKVADPLYEMLIELQTARMYNKSLAVGDKSYKTPL ENTFNKIDKILSKLSLLDKKYGKKLDMNKSFAELLSMYDNLKQNAYSFNPYQVNKNYDTISNFLTDKLIIRDCYIRGKLI KDPDFADSTAITGFFGNQPHIILKVGKLQSKSFELINISKQNATSNTAQSTNSTSNLNNSLNQQSASNQQNTYIHHLVMD ISSLLSSIREHIHYACLFYNESARANKFYNEIHLSANAYKRYINDTFKPIIEKILDNPESAYIYKEQFVSSLSKLQTLSN ALSRDTIHTLEKSVNIRDAKDHEVLYVSLFVVSIGIVLSMWFVYLTIKSIDNNVSILNRVANEFKNGNLNIKAEIRYQDE IGKAIESLVDGVGTANSILQDIKSTIERMGSLDFTKNVETDAVGDFEAIKNDVNKSLDALRKLLQAITESVVKLGTSMEE TSATTNALALDNKNLNEQINALANSIEEISATVNSIASNMTDTKNIINKLFEIVNKGKLAINQTRVDADMMSELAKKAVS IVDSIVFITEQTNLLALNAAIEAARAGEAGRGFAVVADEVKKLAEKAGGFAKNVSDIISDITKGVNSTVKSILMVDDYYK DIENYTSNVQEASQSISSAIEEQNATLNMLNNSMLDVRTFSDKLAAAIEELSATAKSLADVAQELKIEVTKFKF
Sequences:
>Translated_714_residues MTNISVKTKLYILGAIVAFFGVVIGAIVFYNTHKAVAQMDQEKYCLKVADPLYEMLIELQTARMYNKSLAVGDKSYKTPL ENTFNKIDKILSKLSLLDKKYGKKLDMNKSFAELLSMYDNLKQNAYSFNPYQVNKNYDTISNFLTDKLIIRDCYIRGKLI KDPDFADSTAITGFFGNQPHIILKVGKLQSKSFELINISKQNATSNTAQSTNSTSNLNNSLNQQSASNQQNTYIHHLVMD ISSLLSSIREHIHYACLFYNESARANKFYNEIHLSANAYKRYINDTFKPIIEKILDNPESAYIYKEQFVSSLSKLQTLSN ALSRDTIHTLEKSVNIRDAKDHEVLYVSLFVVSIGIVLSMWFVYLTIKSIDNNVSILNRVANEFKNGNLNIKAEIRYQDE IGKAIESLVDGVGTANSILQDIKSTIERMGSLDFTKNVETDAVGDFEAIKNDVNKSLDALRKLLQAITESVVKLGTSMEE TSATTNALALDNKNLNEQINALANSIEEISATVNSIASNMTDTKNIINKLFEIVNKGKLAINQTRVDADMMSELAKKAVS IVDSIVFITEQTNLLALNAAIEAARAGEAGRGFAVVADEVKKLAEKAGGFAKNVSDIISDITKGVNSTVKSILMVDDYYK DIENYTSNVQEASQSISSAIEEQNATLNMLNNSMLDVRTFSDKLAAAIEELSATAKSLADVAQELKIEVTKFKF >Mature_713_residues TNISVKTKLYILGAIVAFFGVVIGAIVFYNTHKAVAQMDQEKYCLKVADPLYEMLIELQTARMYNKSLAVGDKSYKTPLE NTFNKIDKILSKLSLLDKKYGKKLDMNKSFAELLSMYDNLKQNAYSFNPYQVNKNYDTISNFLTDKLIIRDCYIRGKLIK DPDFADSTAITGFFGNQPHIILKVGKLQSKSFELINISKQNATSNTAQSTNSTSNLNNSLNQQSASNQQNTYIHHLVMDI SSLLSSIREHIHYACLFYNESARANKFYNEIHLSANAYKRYINDTFKPIIEKILDNPESAYIYKEQFVSSLSKLQTLSNA LSRDTIHTLEKSVNIRDAKDHEVLYVSLFVVSIGIVLSMWFVYLTIKSIDNNVSILNRVANEFKNGNLNIKAEIRYQDEI GKAIESLVDGVGTANSILQDIKSTIERMGSLDFTKNVETDAVGDFEAIKNDVNKSLDALRKLLQAITESVVKLGTSMEET SATTNALALDNKNLNEQINALANSIEEISATVNSIASNMTDTKNIINKLFEIVNKGKLAINQTRVDADMMSELAKKAVSI VDSIVFITEQTNLLALNAAIEAARAGEAGRGFAVVADEVKKLAEKAGGFAKNVSDIISDITKGVNSTVKSILMVDDYYKD IENYTSNVQEASQSISSAIEEQNATLNMLNNSMLDVRTFSDKLAAAIEELSATAKSLADVAQELKIEVTKFKF
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1787690, Length=306, Percent_Identity=28.4313725490196, Blast_Score=99, Evalue=6e-22, Organism=Escherichia coli, GI2367378, Length=389, Percent_Identity=25.4498714652956, Blast_Score=90, Evalue=5e-19, Organism=Escherichia coli, GI1788194, Length=278, Percent_Identity=28.4172661870504, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1788195, Length=227, Percent_Identity=30.3964757709251, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1789453, Length=230, Percent_Identity=29.1304347826087, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 79375; Mature: 79244
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNISVKTKLYILGAIVAFFGVVIGAIVFYNTHKAVAQMDQEKYCLKVADPLYEMLIELQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TARMYNKSLAVGDKSYKTPLENTFNKIDKILSKLSLLDKKYGKKLDMNKSFAELLSMYDN HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LKQNAYSFNPYQVNKNYDTISNFLTDKLIIRDCYIRGKLIKDPDFADSTAITGFFGNQPH HHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCCCE IILKVGKLQSKSFELINISKQNATSNTAQSTNSTSNLNNSLNQQSASNQQNTYIHHLVMD EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH ISSLLSSIREHIHYACLFYNESARANKFYNEIHLSANAYKRYINDTFKPIIEKILDNPES HHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCH AYIYKEQFVSSLSKLQTLSNALSRDTIHTLEKSVNIRDAKDHEVLYVSLFVVSIGIVLSM HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH WFVYLTIKSIDNNVSILNRVANEFKNGNLNIKAEIRYQDEIGKAIESLVDGVGTANSILQ HHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCHHHHHH DIKSTIERMGSLDFTKNVETDAVGDFEAIKNDVNKSLDALRKLLQAITESVVKLGTSMEE HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH TSATTNALALDNKNLNEQINALANSIEEISATVNSIASNMTDTKNIINKLFEIVNKGKLA HCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE INQTRVDADMMSELAKKAVSIVDSIVFITEQTNLLALNAAIEAARAGEAGRGFAVVADEV EEHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHCCCCCCCHHHHHHHH KKLAEKAGGFAKNVSDIISDITKGVNSTVKSILMVDDYYKDIENYTSNVQEASQSISSAI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEQNATLNMLNNSMLDVRTFSDKLAAAIEELSATAKSLADVAQELKIEVTKFKF HHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TNISVKTKLYILGAIVAFFGVVIGAIVFYNTHKAVAQMDQEKYCLKVADPLYEMLIELQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TARMYNKSLAVGDKSYKTPLENTFNKIDKILSKLSLLDKKYGKKLDMNKSFAELLSMYDN HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LKQNAYSFNPYQVNKNYDTISNFLTDKLIIRDCYIRGKLIKDPDFADSTAITGFFGNQPH HHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCCCE IILKVGKLQSKSFELINISKQNATSNTAQSTNSTSNLNNSLNQQSASNQQNTYIHHLVMD EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH ISSLLSSIREHIHYACLFYNESARANKFYNEIHLSANAYKRYINDTFKPIIEKILDNPES HHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCH AYIYKEQFVSSLSKLQTLSNALSRDTIHTLEKSVNIRDAKDHEVLYVSLFVVSIGIVLSM HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH WFVYLTIKSIDNNVSILNRVANEFKNGNLNIKAEIRYQDEIGKAIESLVDGVGTANSILQ HHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCHHHHHH DIKSTIERMGSLDFTKNVETDAVGDFEAIKNDVNKSLDALRKLLQAITESVVKLGTSMEE HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH TSATTNALALDNKNLNEQINALANSIEEISATVNSIASNMTDTKNIINKLFEIVNKGKLA HCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE INQTRVDADMMSELAKKAVSIVDSIVFITEQTNLLALNAAIEAARAGEAGRGFAVVADEV EEHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHCCCCCCCHHHHHHHH KKLAEKAGGFAKNVSDIISDITKGVNSTVKSILMVDDYYKDIENYTSNVQEASQSISSAI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEQNATLNMLNNSMLDVRTFSDKLAAAIEELSATAKSLADVAQELKIEVTKFKF HHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]